RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA734313" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA734313 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27716195 27716195 PRJNA734313_S_NODE_23144_length_193_cov_2.595890_g23031_i0 PRJNA734313 23144 193 2.59589 5.0100677 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 50.1 4.65e-5   NR XP_004340070.1 1257118 g23031 i0 80 0.38860103626943 25 5 38.9 0 12 86 289 313 XP_004340070.1 uncharacterized protein ACA1_161760 [Acanthamoeba castellanii str. Neff] diamond 75 50.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30494859 30494859 PRJNA734313_S_NODE_26233_length_181_cov_1.141791_g26120_i0 PRJNA734313 26233 181 1.141791 2.06664171 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 50.1 1.08e-5   NR XP_004342140.1 1257118 g26120 i0 96 0.414364640883978 25 1 41.4 0 179 105 86 110 XP_004342140.1 signal recognition particle 19 kDa protein [Acanthamoeba castellanii str. Neff] diamond 75 50.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32550422 32550422 PRJNA734313_S_NODE_17319_length_225_cov_1.432584_g17206_i0 PRJNA734313 17319 225 1.432584 3.223314 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 121 6.2099999999999994e-30   NR XP_004337345.1 1257118 g17206 i0 93.5 0.826666666666667 62 4 82.7 0 220 35 204 265 XP_004337345.1 uncharacterized protein ACA1_221330 [Acanthamoeba castellanii str. Neff] diamond 186 121 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;