RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA734313" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA734313 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28726180 28726180 PRJNA734313_S_NODE_10907_length_284_cov_3.953586_g10794_i0 PRJNA734313 10907 284 3.953586 11.22818424 uncultured Rothia sp. 316088 Bacteria Bacteria 82.8 5.76e-18   NR WP_346844428.1 316088 g10794 i0 62.1 0.697183098591549 66 25 69.7 0 3 200 54 119 WP_346844428.1 DUF1304 domain-containing protein [uncultured Rothia sp.] diamond 198 82.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Rothia uncultured Rothia sp.
29105230 29105230 PRJNA734313_S_NODE_22448_length_196_cov_5.550336_g22335_i0 PRJNA734313 22448 196 5.550336 10.87865856 Cutibacterium acnes 1747 Bacteria Bacteria 90.5 5.37e-22   NR MES8350298.1 1747 g22335 i0 75 0.857142857142857 56 14 85.7 0 1 168 28 83 MES8350298.1 hypothetical protein [Cutibacterium acnes] diamond 168 90.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
29746488 29746488 PRJNA734313_S_NODE_17530_length_223_cov_19.562500_g17417_i0 PRJNA734313 17530 223 19.5625 43.624375 Bacillati 1783272 Bacteria Bacteria 48.9 1.91e-5   NR MES8350298.1 1747 g17417 i0 57.9 1.02242152466368 38 16 51.1 0 221 108 37 74 MES8350298.1 hypothetical protein [Cutibacterium acnes] diamond 228 48.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
31316349 31316349 PRJNA734313_S_NODE_23855_length_190_cov_2.181818_g23742_i0 PRJNA734313 23855 190 2.181818 4.1454542 Rubrobacteraceae bacterium 2740537 Bacteria Bacteria 72 1.47e-14   NR HET7480804.1 2740537 g23742 i0 53.3 1.89473684210526 60 28 94.7 0 185 6 20 79 HET7480804.1 C40 family peptidase [Rubrobacteraceae bacterium] diamond 360 72 1 Bacteria   Bacillati Actinomycetota Rubrobacteria Rubrobacterales Rubrobacteraceae   Rubrobacteraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;