RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA734313" and tax_clade = "Sar"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

bioproject 1

  • PRJNA734313 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27188880 27188880 PRJNA734313_S_NODE_15722_length_237_cov_1.752632_g15609_i0 PRJNA734313 15722 237 1.752632 4.15373784 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 50.8 4.92e-5   NR KAL4435527.1 5901 g15609 i0 37.7 3.8987341772151902 61 38 77.2 0 236 54 878 938 KAL4435527.1 hypothetical protein ABPG74_020303 [Tetrahymena malaccensis] diamond 924 51.2 0.9921875 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena malaccensis
29546925 29546925 PRJNA734313_S_NODE_22150_length_198_cov_1.331126_g22037_i0 PRJNA734313 22150 198 1.331126 2.63562948 Aureococcus anophagefferens 44056 SAR_Eukaryotes SAR_Eukaryotes 75.9 1.02e-14   NR XP_009032113.1 44056 g22037 i0 59.1 3 66 25 97 2 197 6 175 240 XP_009032113.1 hypothetical protein AURANDRAFT_5643, partial [Aureococcus anophagefferens] diamond 594 75.9 1 Eukaryota Sar     Pelagophyceae Pelagomonadales Pelagomonadaceae Aureococcus Aureococcus anophagefferens
31126280 31126280 PRJNA734313_S_NODE_5275_length_387_cov_2.541176_g5163_i0 PRJNA734313 5275 387 2.541176 9.83435112 Ichthyophthirius multifiliis 5932 SAR_Eukaryotes SAR_Eukaryotes 46.6 0.0082   NR XP_004035747.1 5932 g5163 i0 54.3 0.550387596899225 35 16 27.1 0 385 281 507 541 XP_004035747.1 spfh domain band 7 family protein [Ichthyophthirius multifiliis] diamond 213 46.6 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida   Ichthyophthirius Ichthyophthirius multifiliis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;