RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA733995" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA733995 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28505082 28505082 PRJNA733995_P_NODE_10927_length_262_cov_2.042328_g10880_i0 PRJNA733995 10927 262 2.042328 5.35089936 Spea bombifrons 233779 Chordata Chordata 80.5 2.53e-15   NR XP_053326285.1 233779 g10880 i0 73.7 5.69083969465649 57 10 65.3 1 175 5 76 127 XP_053326285.1 rho GTPase-activating protein 29 [Spea bombifrons] diamond 1491 81.3 0.990159901599016 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pelobatidae Spea Spea bombifrons
28505109 28505109 PRJNA733995_P_NODE_6827_length_328_cov_1.509804_g6780_i0 PRJNA733995 6827 328 1.509804 4.95215712 Condylura cristata 143302 Chordata Chordata 73.2 1.35e-12   NR XP_012576637.1 143302 g6780 i0 61.2 0.896341463414634 49 19 44.8 0 12 158 52 100 XP_012576637.1 PREDICTED: WD repeat-containing protein 5 [Condylura cristata] diamond 294 73.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Eulipotyphla Talpidae Condylura Condylura cristata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;