RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA733995" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA733995 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28978876 28978876 PRJNA733995_P_NODE_13628_length_242_cov_0.911243_g13581_i0 PRJNA733995 13628 242 0.911243 2.20520806 Marinococcus luteus 1122204 Bacteria Bacteria 114 1.07e-28   NR WP_091610342.1 1122204 g13581 i0 100 0.694214876033058 56 0 69.4 0 169 2 1 56 WP_091610342.1 4-hydroxy-tetrahydrodipicolinate synthase [Marinococcus luteus] diamond 168 114 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Bacillaceae Marinococcus Marinococcus luteus
29231506 29231506 PRJNA733995_P_NODE_1449_length_749_cov_1.550296_g1405_i0 PRJNA733995 1449 749 1.550296 11.61171704 Clostridia bacterium 2044939 Bacteria Bacteria 47 0.0437   NR MBC7347054.1 2044939 g1405 i0 33.8 0.520694259012016 65 41 25.2 1 404 592 103 167 MBC7347054.1 D-alanyl-D-alanine carboxypeptidase [Clostridia bacterium] diamond 390 47 1 Bacteria   Bacillati Bacillota Clostridia       Clostridia bacterium
30400401 30400401 PRJNA733995_P_NODE_2673_length_549_cov_3.905462_g2626_i0 PRJNA733995 2673 549 3.905462 21.44098638 Bacillota bacterium 1879010 Bacteria Bacteria 45.4 0.0426   NR NLL43705.1 1879010 g2626 i0 24.4 0.672131147540984 123 88 67.2 2 91 459 87 204 NLL43705.1 FtsQ-type POTRA domain-containing protein [Bacillota bacterium] diamond 369 45.4 1 Bacteria   Bacillati Bacillota         Bacillota bacterium
32360573 32360573 PRJNA733995_P_NODE_7559_length_312_cov_1.933054_g7512_i0 PRJNA733995 7559 312 1.933054 6.03112848 Roseburia sp. 2049040 Bacteria Bacteria 44.3 0.0217   NR MFR4351945.1 2049040 g7512 i0 33.7 0.798076923076923 83 33 58.7 4 124 306 147 229 MFR4351945.1 site-specific tyrosine recombinase XerD [Roseburia sp.] diamond 249 44.3 1 Bacteria   Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Roseburia Roseburia sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;