RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA733995" and tax_phylum = "Arthropoda"

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tax_superkingdom 1

tax_phylum 1

  • Arthropoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA733995 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14745551 14745551 PRJNA733995_P_NODE_13452_length_243_cov_0.905882_g13405_i0 PRJNA733995 13452 243 0.905882 2.20129326 Sarcoptes scabiei 52283 Arthropoda Arthropoda 115 2.799999999999999e-29   NR KAI7692677.1 52283 g13405 i0 72.5 10.8641975308642 80 22 98.8 0 3 242 97 176 KAI7692677.1 hypothetical protein SSS_06703 [Sarcoptes scabiei] diamond 2640 115 1 Eukaryota Opisthokonta Metazoa Arthropoda Arachnida Sarcoptiformes Sarcoptidae Sarcoptes Sarcoptes scabiei
26703959 26703959 PRJNA733995_P_NODE_11521_length_255_cov_2.923077_g11474_i0 PRJNA733995 11521 255 2.923077 7.45384635 Portunus trituberculatus 210409 Arthropoda Arthropoda 40.4 0.0436   NR MPC90678.1 210409 g11474 i0 48.7 0.458823529411765 39 19 44.7 1 83 196 2 40 MPC90678.1 hypothetical protein [Portunus trituberculatus] diamond 117 40.4 1 Eukaryota Opisthokonta Metazoa Arthropoda Malacostraca Decapoda Portunidae Portunus Portunus trituberculatus
27779083 27779083 PRJNA733995_P_NODE_5404_length_371_cov_1.033557_g5357_i0 PRJNA733995 5404 371 1.033557 3.83449647 Portunus trituberculatus 210409 Arthropoda Arthropoda 63.5 6.89e-10   NR XP_045134091.1 210409 g5357 i0 55.7 0.986522911051213 61 26 48.5 1 369 190 41 101 XP_045134091.1 LYR motif-containing protein 1-like isoform X1 [Portunus trituberculatus] diamond 366 63.5 1 Eukaryota Opisthokonta Metazoa Arthropoda Malacostraca Decapoda Portunidae Portunus Portunus trituberculatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;