contig_metadata
25 rows where analysis = "diamond", bioproject = "PRJNA733995" and tax_phylum = "Actinomycetota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 7095363 | 7095363 | PRJNA733995_P_NODE_9186_length_284_cov_2.066351_g9139_i0 | PRJNA733995 | 9186 | 284 | 2.066351 | 5.86843684 | Actinomycetes | 1760 | Bacteria | Bacteria | 143 | 1.5899999999999999e-40 | NR | HEU5456857.1 | 35761 | g9139 | i0 | 76.6 | 1.98591549295775 | 94 | 22 | 99.3 | 0 | 1 | 282 | 67 | 160 | HEU5456857.1 hypothetical protein [Nocardioides sp.] | diamond | 564 | 143 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Propionibacteriales | Nocardioidaceae | Nocardioides | Nocardioides sp. | ||
| 9645111 | 9645111 | PRJNA733995_P_NODE_14148_length_226_cov_2.516340_g14101_i0 | PRJNA733995 | 14148 | 226 | 2.51634 | 5.6869284 | Geodermatophilaceae | 85030 | Bacteria | Bacteria | 117 | 1.74e-28 | NR | MCW2695403.1 | 1873466 | g14101 | i0 | 84.7 | 4.84513274336283 | 72 | 11 | 95.6 | 0 | 6 | 221 | 38 | 109 | MCW2695403.1 nadE2 [Modestobacter sp.] | diamond | 1095 | 118 | 0.991525423728814 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Geodermatophilales | Geodermatophilaceae | Modestobacter | Modestobacter sp. | ||
| 13470438 | 13470438 | PRJNA733995_P_NODE_9871_length_275_cov_2.108911_g9824_i0 | PRJNA733995 | 9871 | 275 | 2.108911 | 5.79950525 | Acidimicrobiales bacterium | 2201156 | Bacteria | Bacteria | 130 | 6.6000000000000005e-37 | NR | HWD53607.1 | 2201156 | g9824 | i0 | 71.3 | 1.02545454545455 | 94 | 24 | 99.3 | 1 | 273 | 1 | 13 | 106 | HWD53607.1 SHOCT domain-containing protein [Acidimicrobiales bacterium] | diamond | 282 | 130 | 1 | Bacteria | Bacillati | Actinomycetota | Acidimicrobiia | Acidimicrobiales | Acidimicrobiales bacterium | ||||
| 14745558 | 14745558 | PRJNA733995_P_NODE_14172_length_220_cov_4.115646_g14125_i0 | PRJNA733995 | 14172 | 220 | 4.115646 | 9.0544212 | Actinomycetota bacterium | 2900548 | Bacteria | Bacteria | 109 | 1.8099999999999999e-28 | NR | MBN9634693.1 | 2900548 | g14125 | i0 | 100 | 0.75 | 55 | 0 | 75 | 0 | 3 | 167 | 112 | 166 | MBN9634693.1 ATP-binding cassette domain-containing protein [Actinomycetota bacterium] | diamond | 165 | 109 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetota bacterium | ||||||
| 14745619 | 14745619 | PRJNA733995_P_NODE_9452_length_281_cov_1.451923_g9405_i0 | PRJNA733995 | 9452 | 281 | 1.451923 | 4.07990363 | Leifsonia naganoensis | 150025 | Bacteria | Bacteria | 136 | 8.289999999999998e-35 | NR | WP_343850588.1 | 150025 | g9405 | i0 | 81.7 | 0.99288256227758 | 93 | 17 | 99.3 | 0 | 3 | 281 | 790 | 882 | WP_343850588.1 helix-turn-helix transcriptional regulator [Leifsonia naganoensis] | diamond | 279 | 136 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Microbacteriaceae | Leifsonia | Leifsonia naganoensis | ||
| 19843547 | 19843547 | PRJNA733995_P_NODE_14016_length_235_cov_2.351852_g13969_i0 | PRJNA733995 | 14016 | 235 | 2.351852 | 5.5268522 | Actinomycetes bacterium | 1883427 | Bacteria | Bacteria | 149 | 1.54e-41 | NR | MCU1486148.1 | 1883427 | g13969 | i0 | 92.3 | 0.995744680851064 | 78 | 6 | 99.6 | 0 | 234 | 1 | 210 | 287 | MCU1486148.1 acyl-CoA dehydrogenase [Actinomycetes bacterium] | diamond | 234 | 149 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Actinomycetes bacterium | |||||
| 21119171 | 21119171 | PRJNA733995_P_NODE_10457_length_268_cov_1.579487_g10410_i0 | PRJNA733995 | 10457 | 268 | 1.579487 | 4.23302516 | Trebonia sp. | 2767075 | Bacteria | Bacteria | 90.9 | 9.77e-20 | NR | MDX6340077.1 | 2767075 | g10410 | i0 | 53.9 | 6.02238805970149 | 89 | 39 | 97.4 | 1 | 265 | 5 | 122 | 210 | MDX6340077.1 hypothetical protein [Trebonia sp.] | diamond | 1614 | 90.9 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Streptosporangiales | Treboniaceae | Trebonia | Trebonia sp. | ||
| 23669640 | 23669640 | PRJNA733995_P_NODE_11459_length_256_cov_2.016393_g11412_i0 | PRJNA733995 | 11459 | 256 | 2.016393 | 5.16196608 | Actinomycetota bacterium | 2900548 | Bacteria | Bacteria | 123 | 1.47e-31 | NR | MDQ3358740.1 | 2900548 | g11412 | i0 | 77.5 | 0.83203125 | 71 | 16 | 83.2 | 0 | 256 | 44 | 294 | 364 | MDQ3358740.1 hypothetical protein [Actinomycetota bacterium] | diamond | 213 | 123 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetota bacterium | ||||||
| 26735449 | 26735449 | PRJNA733995_P_NODE_8961_length_288_cov_1.116279_g8914_i0 | PRJNA733995 | 8961 | 288 | 1.116279 | 3.21488352 | Actinomycetota bacterium | 2900548 | Bacteria | Bacteria | 45.8 | 0.00492 | NR | MFM8304466.1 | 2900548 | g8914 | i0 | 40.3 | 0.645833333333333 | 62 | 31 | 60.4 | 2 | 68 | 241 | 100 | 159 | MFM8304466.1 zinc-binding dehydrogenase [Actinomycetota bacterium] | diamond | 186 | 45.8 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetota bacterium | ||||||
| 26767538 | 26767538 | PRJNA733995_P_NODE_11761_length_252_cov_2.284916_g11714_i0 | PRJNA733995 | 11761 | 252 | 2.284916 | 5.75798832 | unclassified Streptomyces | 2593676 | Bacteria | Bacteria | 40.8 | 0.0415 | NR | WP_385247137.1 | 2593676 | g11714 | i0 | 44.2 | 0.511904761904762 | 43 | 24 | 51.2 | 0 | 143 | 15 | 8 | 50 | WP_385247137.1 MULTISPECIES: hypothetical protein [unclassified Streptomyces] | diamond | 129 | 40.8 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Kitasatosporales | Streptomycetaceae | Streptomyces | |||
| 27125440 | 27125440 | PRJNA733995_P_NODE_7842_length_308_cov_0.982979_g7795_i0 | PRJNA733995 | 7842 | 308 | 0.982979 | 3.02757532 | Bacteria | 2 | Bacteria | Bacteria | 93.6 | 4.56e-20 | NR | HEY2766212.1 | 1873463 | g7795 | i0 | 48.6 | 2.06493506493507 | 107 | 45 | 95.5 | 2 | 303 | 10 | 7 | 112 | HEY2766212.1 bifunctional RNase H/acid phosphatase [Pseudonocardiaceae bacterium] | diamond | 636 | 94 | 0.995744680851064 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Pseudonocardiales | Pseudonocardiaceae | Pseudonocardiaceae bacterium | |||
| 27188879 | 27188879 | PRJNA733995_P_NODE_4722_length_398_cov_1.344615_g4675_i0 | PRJNA733995 | 4722 | 398 | 1.344615 | 5.3515677 | Actinomycetes | 1760 | Bacteria | Bacteria | 53.1 | 4.49e-5 | NR | WP_108952806.1 | 67301 | g4675 | i0 | 34.5 | 9.36934673366834 | 119 | 52 | 88.9 | 5 | 358 | 5 | 1 | 94 | WP_108952806.1 DUF262 domain-containing protein [Streptomyces fragilis] | diamond | 3729 | 53.5 | 0.992523364485981 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Kitasatosporales | Streptomycetaceae | Streptomyces | Streptomyces fragilis | ||
| 27631431 | 27631431 | PRJNA733995_P_NODE_9464_length_281_cov_1.125000_g9417_i0 | PRJNA733995 | 9464 | 281 | 1.125 | 3.16125 | Bacteria | 2 | Bacteria | Bacteria | 134 | 1.4499999999999998e-37 | NR | HUF32867.1 | 2201156 | g9417 | i0 | 68.5 | 7.55871886120996 | 89 | 28 | 95 | 0 | 278 | 12 | 102 | 190 | HUF32867.1 alpha/beta family hydrolase [Acidimicrobiales bacterium] | diamond | 2124 | 135 | 0.992592592592593 | Bacteria | Bacillati | Actinomycetota | Acidimicrobiia | Acidimicrobiales | Acidimicrobiales bacterium | ||||
| 27873661 | 27873661 | PRJNA733995_P_NODE_7665_length_310_cov_3.033755_g7618_i0 | PRJNA733995 | 7665 | 310 | 3.033755 | 9.4046405 | unclassified Rhodococcus (in: high G+C Gram-positive bacteria) | 192944 | Bacteria | Bacteria | 160 | 3.49e-44 | NR | WP_054186524.1 | 192944 | g7618 | i0 | 66.4 | 1.44193548387097 | 149 | 4 | 99.7 | 1 | 2 | 310 | 170 | 318 | WP_054186524.1 MULTISPECIES: hydantoinase/oxoprolinase N-terminal domain-containing protein [unclassified Rhodococcus (in: high G+C Gram-positive bacteria)] | diamond | 447 | 160 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Mycobacteriales | Nocardiaceae | Rhodococcus | |||
| 27947068 | 27947068 | PRJNA733995_P_NODE_10185_length_271_cov_2.823232_g10138_i0 | PRJNA733995 | 10185 | 271 | 2.823232 | 7.65095872 | Mycobacteroides | 670516 | Bacteria | Bacteria | 106 | 2.89e-26 | NR | WP_070938709.1 | 948102 | g10138 | i0 | 92.7 | 1.22878228782288 | 55 | 4 | 60.9 | 0 | 170 | 6 | 130 | 184 | WP_070938709.1 TetR/AcrR family transcriptional regulator [Mycobacteroides franklinii] | diamond | 333 | 107 | 0.990654205607477 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Mycobacteriales | Mycobacteriaceae | Mycobacteroides | Mycobacteroides franklinii | ||
| 28473637 | 28473637 | PRJNA733995_P_NODE_12846_length_246_cov_1.335260_g12799_i0 | PRJNA733995 | 12846 | 246 | 1.33526 | 3.2847396 | Pontimonas sp. | 2304492 | Bacteria | Bacteria | 40.4 | 0.0422 | NR | MEQ9086909.1 | 2304492 | g12799 | i0 | 34.9 | 0.524390243902439 | 43 | 28 | 52.4 | 0 | 181 | 53 | 30 | 72 | MEQ9086909.1 hypothetical protein [Pontimonas sp.] | diamond | 129 | 40.4 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Microbacteriaceae | Pontimonas | Pontimonas sp. | ||
| 28505112 | 28505112 | PRJNA733995_P_NODE_7887_length_307_cov_0.957265_g7840_i0 | PRJNA733995 | 7887 | 307 | 0.957265 | 2.93880355 | Streptomyces sp. NPDC127197 | 3345388 | Bacteria | Bacteria | 43.5 | 0.0366 | NR | WP_385785415.1 | 3345388 | g7840 | i0 | 36.8 | 0.664495114006515 | 68 | 43 | 66.4 | 0 | 204 | 1 | 24 | 91 | WP_385785415.1 ATP-binding protein [Streptomyces sp. NPDC127197] | diamond | 204 | 43.5 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Kitasatosporales | Streptomycetaceae | Streptomyces | Streptomyces sp. NPDC127197 | ||
| 29989236 | 29989236 | PRJNA733995_P_NODE_8051_length_303_cov_1.339130_g8004_i0 | PRJNA733995 | 8051 | 303 | 1.33913 | 4.0575639 | Streptomyces sp. NPDC | 1931 | Bacteria | Bacteria | 43.5 | 0.0394 | NR | WP_361314835.1 | 3154897 | g8004 | i0 | 35 | 0.594059405940594 | 60 | 38 | 59.4 | 1 | 236 | 57 | 141 | 199 | WP_361314835.1 DUF3492 domain-containing protein [Streptomyces sp. NPDC020742] | diamond | 180 | 43.5 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Kitasatosporales | Streptomycetaceae | Streptomyces | Streptomyces sp. NPDC020742 | ||
| 30526283 | 30526283 | PRJNA733995_P_NODE_8253_length_299_cov_2.924779_g8206_i0 | PRJNA733995 | 8253 | 299 | 2.924779 | 8.74508921 | Dietzia cinnamea | 321318 | Bacteria | Bacteria | 118 | 6.999999999999998e-30 | NR | WP_061228862.1 | 321318 | g8206 | i0 | 70.8 | 0.963210702341137 | 96 | 1 | 69.2 | 1 | 207 | 1 | 1 | 96 | WP_061228862.1 PDR/VanB family oxidoreductase [Dietzia cinnamea] | diamond | 288 | 118 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Mycobacteriales | Dietziaceae | Dietzia | Dietzia cinnamea | ||
| 30557688 | 30557688 | PRJNA733995_P_NODE_9393_length_282_cov_1.133971_g9346_i0 | PRJNA733995 | 9393 | 282 | 1.133971 | 3.19779822 | Knoellia flava | 913969 | Bacteria | Bacteria | 80.5 | 1.03e-15 | NR | WP_035946348.1 | 913969 | g9346 | i0 | 92 | 0.531914893617021 | 50 | 4 | 53.2 | 0 | 152 | 3 | 1 | 50 | WP_035946348.1 hypothetical protein [Knoellia flava] | diamond | 150 | 80.5 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Intrasporangiaceae | Knoellia | Knoellia flava | ||
| 30968812 | 30968812 | PRJNA733995_P_NODE_10174_length_272_cov_1.160804_g10127_i0 | PRJNA733995 | 10174 | 272 | 1.160804 | 3.15738688 | Actinomycetota bacterium | 2900548 | Bacteria | Bacteria | 86.7 | 7.08e-18 | NR | NBU15968.1 | 2900548 | g10127 | i0 | 53.4 | 1.88602941176471 | 88 | 39 | 94.9 | 2 | 261 | 4 | 233 | 320 | NBU15968.1 2OG-Fe(II) oxygenase [Actinomycetota bacterium] | diamond | 513 | 86.7 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetota bacterium | ||||||
| 30968841 | 30968841 | PRJNA733995_P_NODE_9054_length_286_cov_2.727700_g9007_i0 | PRJNA733995 | 9054 | 286 | 2.7277 | 7.801222 | Microbacterium sp. GCS4 | 1692239 | Bacteria | Bacteria | 178 | 1.84e-49 | NR | WP_050723285.1 | 1692239 | g9007 | i0 | 97.9 | 0.996503496503496 | 95 | 2 | 99.7 | 0 | 285 | 1 | 331 | 425 | WP_050723285.1 Ig-like domain-containing protein [Microbacterium sp. GCS4] | diamond | 285 | 178 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Microbacteriaceae | Microbacterium | Microbacterium sp. GCS4 | ||
| 31284589 | 31284589 | PRJNA733995_P_NODE_5835_length_356_cov_1.632509_g5788_i0 | PRJNA733995 | 5835 | 356 | 1.632509 | 5.81173204 | Yinghuangia sp. ASG 1 | 2846307 | Bacteria | Bacteria | 72.8 | 3.97e-12 | NR | WP_231774599.1 | 2896848 | g5788 | i0 | 37.9 | 1.92977528089888 | 116 | 61 | 94.4 | 3 | 353 | 18 | 63 | 171 | WP_231774599.1 WD40 repeat domain-containing protein [Yinghuangia sp. ASG 101] | diamond | 687 | 72.8 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Kitasatosporales | Streptomycetaceae | Yinghuangia | Yinghuangia sp. ASG 101 | ||
| 31284597 | 31284597 | PRJNA733995_P_NODE_9735_length_277_cov_1.509804_g9688_i0 | PRJNA733995 | 9735 | 277 | 1.509804 | 4.18215708 | Rhodococcus sp. PvP104 | 2817911 | Bacteria | Bacteria | 132 | 1.56e-36 | NR | MBP2521034.1 | 2817911 | g9688 | i0 | 98.5 | 0.736462093862816 | 68 | 1 | 73.6 | 0 | 3 | 206 | 102 | 169 | MBP2521034.1 hypothetical protein [Rhodococcus sp. PvP104] | diamond | 204 | 132 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Mycobacteriales | Nocardiaceae | Rhodococcus | Rhodococcus sp. PvP104 | ||
| 31316321 | 31316321 | PRJNA733995_P_NODE_13995_length_236_cov_2.361963_g13948_i0 | PRJNA733995 | 13995 | 236 | 2.361963 | 5.57423268 | Aquipuribacter hungaricus | 545624 | Bacteria | Bacteria | 141 | 4.38e-41 | NR | WP_340295291.1 | 545624 | g13948 | i0 | 88.5 | 1.98305084745763 | 78 | 9 | 99.2 | 0 | 236 | 3 | 19 | 96 | WP_340295291.1 DUF721 domain-containing protein, partial [Aquipuribacter hungaricus] | diamond | 468 | 141 | 1 | Bacteria | Bacillati | Actinomycetota | Actinomycetes | Micrococcales | Intrasporangiaceae | Aquipuribacter | Aquipuribacter hungaricus |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;