RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA733995" and tax_clade = "Sar"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA733995 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27020777 27020777 PRJNA733995_P_NODE_1542_length_725_cov_2.461656_g1498_i0 PRJNA733995 1542 725 2.461656 17.847006 Seminavis robusta 568900 SAR_Eukaryotes SAR_Eukaryotes 49.3 0.00806   NR CAB9512359.1 568900 g1498 i0 47.6 0.173793103448276 42 22 17.4 0 274 149 369 410 CAB9512359.1 unknown protein [Seminavis robusta] diamond 126 49.3 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Seminavis Seminavis robusta
29841521 29841521 PRJNA733995_P_NODE_371_length_1435_cov_2.685022_g358_i0 PRJNA733995 371 1435 2.685022 38.5300657 Perkinsus 28000 SAR_Eukaryotes SAR_Eukaryotes 98.6 4.78e-18   NR KAF4730256.1 32597 g358 i0 36.1 1.8418118466899 169 99 34.3 4 1058 567 121 285 KAF4730256.1 hypothetical protein FOZ63_027845, partial [Perkinsus olseni] diamond 2643 98.6 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;