RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA733995" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA733995 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28000175 28000175 PRJNA733995_P_NODE_4665_length_400_cov_1.363914_g4618_i0 PRJNA733995 4665 400 1.363914 5.455656 Planctomycetota bacterium 2026780 Bacteria Bacteria 53.9 2.17e-5   NR MDR3077761.1 2026780 g4618 i0 37.3 0.825 110 53 77.3 3 63 371 92 192 MDR3077761.1 DNA mismatch repair endonuclease MutL [Planctomycetota bacterium] diamond 330 53.9 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
28947435 28947435 PRJNA733995_P_NODE_2668_length_550_cov_2.167715_g2621_i0 PRJNA733995 2668 550 2.167715 11.9224325 Planctomycetaceae bacterium 2026779 Bacteria Bacteria 46.2 0.0416   NR HCP14133.1 2026779 g2621 i0 47.6 0.458181818181818 42 22 22.9 0 433 308 1021 1062 HCP14133.1 hypothetical protein [Planctomycetaceae bacterium] diamond 252 46.2 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   Planctomycetaceae bacterium
29357685 29357685 PRJNA733995_P_NODE_11669_length_253_cov_2.933333_g11622_i0 PRJNA733995 11669 253 2.933333 7.42133249 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 43.1 0.022   NR MEI6341235.1 2026799 g11622 i0 37.3 0.889328063241107 75 38 78.3 2 46 243 84 158 MEI6341235.1 permease prefix domain 1-containing protein [Verrucomicrobiota bacterium] diamond 225 43.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
32360568 32360568 PRJNA733995_P_NODE_5939_length_352_cov_1.917563_g5892_i0 PRJNA733995 5939 352 1.917563 6.74982176 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 44.3 0.0351   NR MBP7825480.1 2026799 g5892 i0 39.6 0.451704545454545 53 32 45.2 0 268 110 199 251 MBP7825480.1 mechanosensitive ion channel [Verrucomicrobiota bacterium] diamond 159 44.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;