contig_metadata
10 rows where analysis = "diamond", bioproject = "PRJNA728642" and tax_phylum = "Acidobacteriota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10916804 | 10916804 | PRJNA728642_P_NODE_12849_length_281_cov_1.480769_g12578_i0 | PRJNA728642 | 12849 | 281 | 1.480769 | 4.16096089 | Pyrinomonadaceae bacterium | 2283092 | Bacteria | Bacteria | 140 | 2.67e-36 | NR | HQU82238.1 | 2283092 | g12578 | i0 | 67.7 | 1.98576512455516 | 93 | 30 | 99.3 | 0 | 3 | 281 | 450 | 542 | HQU82238.1 hypothetical protein [Pyrinomonadaceae bacterium] | diamond | 558 | 140 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | Blastocatellia | Blastocatellales | Pyrinomonadaceae | Pyrinomonadaceae bacterium | |||
| 26672126 | 26672126 | PRJNA728642_P_NODE_18481_length_244_cov_0.900585_g18210_i0 | PRJNA728642 | 18481 | 244 | 0.900585 | 2.1974274 | Vicinamibacterales bacterium | 2910147 | Bacteria | Bacteria | 102 | 2.4099999999999998e-24 | NR | HEX2461388.1 | 2910147 | g18210 | i0 | 66.7 | 1.99180327868852 | 81 | 27 | 99.6 | 0 | 2 | 244 | 14 | 94 | HEX2461388.1 histidine kinase dimerization/phospho-acceptor domain-containing protein [Vicinamibacterales bacterium] | diamond | 486 | 102 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | Vicinamibacteria | Vicinamibacterales | Vicinamibacterales bacterium | ||||
| 27431792 | 27431792 | PRJNA728642_P_NODE_19823_length_238_cov_2.109091_g19552_i0 | PRJNA728642 | 19823 | 238 | 2.109091 | 5.01963658 | Acidobacteriota bacterium | 1978231 | Bacteria | Bacteria | 147 | 2.7499999999999993e-42 | NR | MBS1795405.1 | 1978231 | g19552 | i0 | 94.9 | 1.99159663865546 | 79 | 4 | 99.6 | 0 | 2 | 238 | 27 | 105 | MBS1795405.1 DUF4388 domain-containing protein [Acidobacteriota bacterium] | diamond | 474 | 147 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | Acidobacteriota bacterium | ||||||
| 27873563 | 27873563 | PRJNA728642_P_NODE_15065_length_258_cov_1.248649_g14794_i0 | PRJNA728642 | 15065 | 258 | 1.248649 | 3.22151442 | Pyrinomonadaceae bacterium | 2283092 | Bacteria | Bacteria | 140 | 1.9399999999999997e-37 | NR | HVE60112.1 | 2283092 | g14794 | i0 | 76.7 | 1 | 86 | 20 | 100 | 0 | 258 | 1 | 53 | 138 | HVE60112.1 acetylxylan esterase [Pyrinomonadaceae bacterium] | diamond | 258 | 140 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | Blastocatellia | Blastocatellales | Pyrinomonadaceae | Pyrinomonadaceae bacterium | |||
| 29105147 | 29105147 | PRJNA728642_P_NODE_17968_length_245_cov_0.895349_g17697_i0 | PRJNA728642 | 17968 | 245 | 0.895349 | 2.19360505 | Pyrinomonadaceae bacterium | 2283092 | Bacteria | Bacteria | 107 | 6.07e-26 | NR | HVE59523.1 | 2283092 | g17697 | i0 | 65 | 0.979591836734694 | 80 | 24 | 93.1 | 1 | 230 | 3 | 1 | 80 | HVE59523.1 hypothetical protein [Pyrinomonadaceae bacterium] | diamond | 240 | 107 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | Blastocatellia | Blastocatellales | Pyrinomonadaceae | Pyrinomonadaceae bacterium | |||
| 30715735 | 30715735 | PRJNA728642_P_NODE_17994_length_245_cov_0.895349_g17723_i0 | PRJNA728642 | 17994 | 245 | 0.895349 | 2.19360505 | Acidobacteriota bacterium | 1978231 | Bacteria | Bacteria | 107 | 2.1200000000000003e-27 | NR | MBS1797069.1 | 1978231 | g17723 | i0 | 70.4 | 0.991836734693878 | 81 | 24 | 99.2 | 0 | 1 | 243 | 26 | 106 | MBS1797069.1 GspH/FimT family pseudopilin [Acidobacteriota bacterium] | diamond | 243 | 107 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | Acidobacteriota bacterium | ||||||
| 30810616 | 30810616 | PRJNA728642_P_NODE_19574_length_241_cov_0.916667_g19303_i0 | PRJNA728642 | 19574 | 241 | 0.916667 | 2.20916747 | Pyrinomonadaceae bacterium | 2283092 | Bacteria | Bacteria | 143 | 6.1e-39 | NR | HEY8562912.1 | 2283092 | g19303 | i0 | 86.1 | 2.9253112033195 | 79 | 11 | 98.3 | 0 | 239 | 3 | 80 | 158 | HEY8562912.1 competence/damage-inducible protein A [Pyrinomonadaceae bacterium] | diamond | 705 | 143 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | Blastocatellia | Blastocatellales | Pyrinomonadaceae | Pyrinomonadaceae bacterium | |||
| 31094911 | 31094911 | PRJNA728642_P_NODE_20095_length_226_cov_2.686275_g19824_i0 | PRJNA728642 | 20095 | 226 | 2.686275 | 6.0709815 | Pyrinomonadaceae bacterium | 2283092 | Bacteria | Bacteria | 146 | 5.999999999999998e-39 | NR | HEY8559325.1 | 2283092 | g19824 | i0 | 90.7 | 2.98672566371681 | 75 | 7 | 99.6 | 0 | 1 | 225 | 90 | 164 | HEY8559325.1 glycoside hydrolase family 15 protein [Pyrinomonadaceae bacterium] | diamond | 675 | 146 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | Blastocatellia | Blastocatellales | Pyrinomonadaceae | Pyrinomonadaceae bacterium | |||
| 31917229 | 31917229 | PRJNA728642_P_NODE_19117_length_242_cov_0.911243_g18846_i0 | PRJNA728642 | 19117 | 242 | 0.911243 | 2.20520806 | Terriglobia bacterium | 2081523 | Bacteria | Bacteria | 47 | 0.00114 | NR | MBK5294833.1 | 2081523 | g18846 | i0 | 76.9 | 0.954545454545455 | 26 | 6 | 32.2 | 0 | 2 | 79 | 376 | 401 | MBK5294833.1 thiol-disulfide isomerase [Terriglobia bacterium] | diamond | 231 | 47 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | Terriglobia | Terriglobia bacterium | |||||
| 32675878 | 32675878 | PRJNA728642_P_NODE_19740_length_241_cov_0.916667_g19469_i0 | PRJNA728642 | 19740 | 241 | 0.916667 | 2.20916747 | Pyrinomonadaceae bacterium | 2283092 | Bacteria | Bacteria | 157 | 1.13e-43 | NR | MBX7173244.1 | 2283092 | g19469 | i0 | 96.2 | 7.95435684647303 | 79 | 3 | 98.3 | 0 | 1 | 237 | 139 | 217 | MBX7173244.1 CoA-acylating methylmalonate-semialdehyde dehydrogenase [Pyrinomonadaceae bacterium] | diamond | 1917 | 157 | 1 | Bacteria | Pseudomonadati | Acidobacteriota | Blastocatellia | Blastocatellales | Pyrinomonadaceae | Pyrinomonadaceae bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;