RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJNA728642" and tax_kingdom = "Metazoa"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Metazoa · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA728642 · 7 ✖

analysis 1

  • diamond · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26640749 26640749 PRJNA728642_P_NODE_19221_length_242_cov_0.911243_g18950_i0 PRJNA728642 19221 242 0.911243 2.20520806 Artemia franciscana 6661 Arthropoda Arthropoda 105 4.0399999999999996e-24   NR XP_065582562.1 6661 g18950 i0 63.6 1.93388429752066 77 28 95.5 0 231 1 502 578 XP_065582562.1 uncharacterized protein LOC136041736 [Artemia franciscana] diamond 468 105 1 Eukaryota Opisthokonta Metazoa Arthropoda Branchiopoda Anostraca Artemiidae Artemia Artemia franciscana
26640750 26640750 PRJNA728642_P_NODE_20001_length_230_cov_2.280255_g19730_i0 PRJNA728642 20001 230 2.280255 5.2445865 Phodopus roborovskii 109678 Chordata Chordata 43.1 0.0226   NR XP_051031607.1 109678 g19730 i0 33.9 0.808695652173913 62 39 80.9 1 17 202 33 92 XP_051031607.1 LOW QUALITY PROTEIN: mucin-12-like, partial [Phodopus roborovskii] diamond 186 43.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Phodopus Phodopus roborovskii
27431790 27431790 PRJNA728642_P_NODE_10463_length_313_cov_2.566667_g10192_i0 PRJNA728642 10463 313 2.566667 8.03366771 Microcaecilia unicolor 1415580 Chordata Chordata 44.7 0.0189   NR XP_030045814.1 1415580 g10192 i0 34.9 0.603833865814696 63 39 58.5 1 58 240 754 816 XP_030045814.1 LOW QUALITY PROTEIN: thyroglobulin [Microcaecilia unicolor] diamond 189 44.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Gymnophiona Siphonopidae Microcaecilia Microcaecilia unicolor
27589586 27589586 PRJNA728642_P_NODE_12344_length_287_cov_1.331776_g12073_i0 PRJNA728642 12344 287 1.331776 3.82219712 Darwinula stevensoni 69355 Arthropoda Arthropoda 161 6.94e-48   NR CAD7243205.1 69355 g12073 i0 81.1 0.993031358885017 95 18 99.3 0 1 285 109 203 CAD7243205.1 unnamed protein product [Darwinula stevensoni] diamond 285 161 1 Eukaryota Opisthokonta Metazoa Arthropoda Ostracoda Podocopida Darwinulidae Darwinula Darwinula stevensoni
29620005 29620005 PRJNA728642_P_NODE_11210_length_302_cov_1.681223_g10939_i0 PRJNA728642 11210 302 1.681223 5.07729346 Metazoa 33208 Arthropoda Arthropoda 49.7 2.55e-4   NR XP_023015979.1 7539 g10939 i0 59 2.69205298013245 39 15 37.7 1 194 81 292 330 XP_023015979.1 uncharacterized protein LOC111505411 [Leptinotarsa decemlineata] diamond 813 49.7 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Coleoptera Chrysomelidae Leptinotarsa Leptinotarsa decemlineata
30662906 30662906 PRJNA728642_P_NODE_6553_length_400_cov_2.694190_g6282_i0 PRJNA728642 6553 400 2.69419 10.77676 Anthophora 60896 Arthropoda Arthropoda 55.5 4.57e-7   NR CAK9820208.1 597840 g6282 i0 70.6 1.5525 34 10 25.5 0 336 235 10 43 CAK9820208.1 hypothetical protein ANTQUA_LOCUS10547 [Anthophora quadrimaculata] diamond 621 55.5 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Hymenoptera Apidae Anthophora Anthophora quadrimaculata
30937140 30937140 PRJNA728642_P_NODE_11734_length_295_cov_1.004505_g11463_i0 PRJNA728642 11734 295 1.004505 2.96328975 Sus scrofa 9823 Chordata Chordata 197 1.11e-58   NR XP_020938199.1 9823 g11463 i0 99 2.98983050847458 98 1 99.7 0 2 295 324 421 XP_020938199.1 ribonuclease inhibitor isoform X2 [Sus scrofa] diamond 882 197 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;