RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA728642" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA728642 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29262621 29262621 PRJNA728642_P_NODE_16189_length_250_cov_0.870056_g15918_i0 PRJNA728642 16189 250 0.870056 2.17514 Planctomyces sp. SH-PL14 1632864 Bacteria Bacteria 60.5 9.95e-9   NR WP_075096394.1 1632864 g15918 i0 78.1 0.384 32 7 38.4 0 102 7 15 46 WP_075096394.1 hypothetical protein [Planctomyces sp. SH-PL14] diamond 96 60.5 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Planctomyces Planctomyces sp. SH-PL14
29546827 29546827 PRJNA728642_P_NODE_17590_length_246_cov_0.890173_g17319_i0 PRJNA728642 17590 246 0.890173 2.18982558 Phycisphaerae bacterium 2026778 Bacteria Bacteria 99.8 9.84e-23   NR MFN5946603.1 2026778 g17319 i0 72.9 3.58536585365854 70 19 85.4 0 210 1 17 86 MFN5946603.1 right-handed parallel beta-helix repeat-containing protein [Phycisphaerae bacterium] diamond 882 99.8 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae       Phycisphaerae bacterium
32170588 32170588 PRJNA728642_P_NODE_16938_length_248_cov_0.880000_g16667_i0 PRJNA728642 16938 248 0.88 2.1824 Pirellulales bacterium 2715253 Bacteria Bacteria 94 1.13e-20   NR MFO0884224.1 2715253 g16667 i0 100 0.568548387096774 47 0 56.9 0 1 141 297 343 MFO0884224.1 c-type cytochrome [Pirellulales bacterium] diamond 141 94 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales     Pirellulales bacterium
32328912 32328912 PRJNA728642_P_NODE_17619_length_246_cov_0.890173_g17348_i0 PRJNA728642 17619 246 0.890173 2.18982558 Opitutaceae bacterium 2006848 Bacteria Bacteria 125 1.45e-33   NR MCU0791479.1 2006848 g17348 i0 76.8 1 82 19 100 0 1 246 99 180 MCU0791479.1 iron-sulfur cluster repair di-iron protein [Opitutaceae bacterium] diamond 246 125 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;