RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA728642" and tax_clade = "Bacteria candidate phyla"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA728642 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27094186 27094186 PRJNA728642_P_NODE_17302_length_247_cov_0.885057_g17031_i0 PRJNA728642 17302 247 0.885057 2.18609079 Bacteria 2 Bacteria Bacteria 90.5 3.91e-19   NR TXI34042.1 2045217 g17031 i0 64.9 3.5587044534413 74 25 89.9 1 1 222 338 410 TXI34042.1 MAG: prolyl-tRNA synthetase [Candidatus Moraniibacteriota bacterium] diamond 879 90.5 1 Bacteria Bacteria candidate phyla   Candidatus Moraniibacteriota         Candidatus Moraniibacteriota bacterium
28852168 28852168 PRJNA728642_P_NODE_17428_length_247_cov_0.885057_g17157_i0 PRJNA728642 17428 247 0.885057 2.18609079 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 93.2 6.51e-20   NR MBC7512538.1 2026720 g17157 i0 55.4 1.0080971659919 83 33 98.4 2 3 245 493 573 MBC7512538.1 phospho-sugar mutase [Candidatus Saccharibacteria bacterium] diamond 249 93.2 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
30557593 30557593 PRJNA728642_P_NODE_14633_length_262_cov_1.629630_g14362_i0 PRJNA728642 14633 262 1.62963 4.2696306 Candidatus Mycosynbacter amalyticus 2665156 Bacteria Bacteria 175 9.38e-49   NR WP_260764013.1 2665156 g14362 i0 98.9 3.98473282442748 87 1 99.6 0 1 261 528 614 WP_260764013.1 type IV secretory system conjugative DNA transfer family protein [Candidatus Mycosynbacter amalyticus] diamond 1044 175 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota       Candidatus Mycosynbacter Candidatus Mycosynbacter amalyticus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;