RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA727760" and tax_phylum = "Pseudomonadota"

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tax_superkingdom 1

tax_phylum 1

  • Pseudomonadota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA727760 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4541063 4541063 PRJNA727760_S_NODE_1704_length_351_cov_1.687050_g1676_i0 PRJNA727760 1704 351 1.68705 5.9215455 Porphyrobacter sp. GA68 2883480 Bacteria Bacteria 96.7 1.18e-20   NR WP_228244238.1 2883480 g1676 i0 96.2 0.452991452991453 53 2 45.3 0 44 202 5 57 WP_228244238.1 alpha/beta fold hydrolase [Porphyrobacter sp. GA68] diamond 159 96.7 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Porphyrobacter Porphyrobacter sp. GA68
32297313 32297313 PRJNA727760_S_NODE_1659_length_357_cov_4.971831_g1631_i0 PRJNA727760 1659 357 4.971831 17.74943667 Pseudomonas syringae group genomosp. 7 251699 Bacteria Bacteria 43.9 0.0117   NR WP_395587240.1 251699 g1631 i0 48.7 0.65546218487395 78 22 58.8 8 115 324 4 71 WP_395587240.1 hypothetical protein [Pseudomonas syringae group genomosp. 7] diamond 234 43.9 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae group genomosp. 7

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;