RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA725806" and tax_phylum = "Spirochaetota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA725806 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26830855 26830855 PRJNA725806_P_NODE_48521_length_251_cov_2.182243_g48224_i0 PRJNA725806 48521 251 2.182243 5.47742993 Spirochaetaceae bacterium 1898206 Bacteria Bacteria 43.5 0.0204   NR MBQ3824867.1 1898206 g48224 i0 40 0.717131474103586 60 33 70.5 2 215 39 36 93 MBQ3824867.1 AraC family transcriptional regulator [Spirochaetaceae bacterium] diamond 180 43.5 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Spirochaetaceae   Spirochaetaceae bacterium
27904876 27904876 PRJNA725806_P_NODE_76365_length_217_cov_1.916667_g76064_i0 PRJNA725806 76365 217 1.916667 4.15916739 Spirochaetota bacterium 2202144 Bacteria Bacteria 42 0.0448   NR RKX72854.1 2202144 g76064 i0 41.9 0.594470046082949 43 25 59.4 0 71 199 159 201 RKX72854.1 MAG: hypothetical protein DRP87_19935 [Spirochaetota bacterium] diamond 129 42 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
29105127 29105127 PRJNA725806_P_NODE_6988_length_408_cov_14.107817_g6704_i0 PRJNA725806 6988 408 14.107817 57.55989336 Spirochaetia bacterium 2053615 Bacteria Bacteria 57 5.81e-8   NR GHV54491.1 2053615 g6704 i0 58 0.367647058823529 50 19 35.3 1 35 178 1 50 GHV54491.1 hypothetical protein AGMMS49579_15160 [Spirochaetia bacterium] diamond 150 57 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia       Spirochaetia bacterium
30020850 30020850 PRJNA725806_P_NODE_2351_length_538_cov_7.666667_g2113_i0 PRJNA725806 2351 538 7.666667 41.24666846 Spirochaetia bacterium 2053615 Bacteria Bacteria 55.5 6.28e-7   NR GHV54491.1 2053615 g2113 i0 54 0.278810408921933 50 21 26.8 1 504 361 1 50 GHV54491.1 hypothetical protein AGMMS49579_15160 [Spirochaetia bacterium] diamond 150 55.5 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia       Spirochaetia bacterium
32875216 32875216 PRJNA725806_P_NODE_83020_length_211_cov_1.321839_g82719_i0 PRJNA725806 83020 211 1.321839 2.78908029 Pseudomonadati 3379134 Bacteria Bacteria 54.3 1.14e-6   NR MDC7225007.1 2026792 g82719 i0 43.8 1.60663507109005 64 33 91 2 3 194 45 105 MDC7225007.1 hypothetical protein [Spirochaetales bacterium] diamond 339 54.3 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales     Spirochaetales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;