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contig_metadata

27 rows where analysis = "diamond", bioproject = "PRJNA725806" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 27 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA725806 · 27 ✖

analysis 1

  • diamond · 27 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9640446 9640446 PRJNA725806_P_NODE_47128_length_253_cov_3.680556_g46831_i0 PRJNA725806 47128 253 3.680556 9.31180668 Rhabditida 6236 Nematoda Nematoda 107 1.64e-25   NR XP_020305940.1 7209 g46831 i0 64.8 23.3122529644269 71 25 84.2 0 40 252 5 75 XP_020305940.1 tubulin alpha chain, variant [Loa loa] diamond 5898 108 0.990740740740741 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Loa Loa loa
26862726 26862726 PRJNA725806_P_NODE_127461_length_180_cov_2.356643_g127159_i0 PRJNA725806 127461 180 2.356643 4.2419574 Aphelenchoides besseyi 269767 Nematoda Nematoda 43.9 0.00647   NR KAI6198928.1 269767 g127159 i0 45 0.666666666666667 40 20 63.3 1 144 31 95 134 KAI6198928.1 Cyp-29A4 [Aphelenchoides besseyi] diamond 120 43.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides besseyi
26904482 26904482 PRJNA725806_P_NODE_91321_length_204_cov_1.688623_g91019_i0 PRJNA725806 91321 204 1.688623 3.44479092 Metazoa 33208 Nematoda Nematoda 42.7 0.0224   NR VDM98082.1 103827 g91019 i0 58.3 3.02941176470588 24 10 35.3 0 79 8 767 790 VDM98082.1 unnamed protein product [Thelazia callipaeda] diamond 618 42.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Thelaziidae Thelazia Thelazia callipaeda
27062574 27062574 PRJNA725806_P_NODE_82062_length_211_cov_9.201149_g81761_i0 PRJNA725806 82062 211 9.201149 19.41442439 Rhabditida 6236 Nematoda Nematoda 43.5 0.0133   NR KAJ1360100.1 148309 g81761 i0 36.4 3.739336492891 66 41 93.8 1 1 198 469 533 KAJ1360100.1 hypothetical protein KIN20_018994 [Parelaphostrongylus tenuis] diamond 789 43.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Metastrongylidae Parelaphostrongylus Parelaphostrongylus tenuis
27400075 27400075 PRJNA725806_P_NODE_6723_length_412_cov_6.274667_g6439_i0 PRJNA725806 6723 412 6.274667 25.85162804 Trichinella britovi 45882 Nematoda Nematoda 52.4 1.81e-5   NR KRY46296.1 45882 g6439 i0 68.4 0.276699029126214 38 12 27.7 0 351 238 96 133 KRY46296.1 Synaptobrevin-1 [Trichinella britovi] diamond 114 52.4 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella britovi
27652685 27652685 PRJNA725806_P_NODE_21544_length_312_cov_3.200000_g21248_i0 PRJNA725806 21544 312 3.2 9.984 Bursaphelenchus okinawaensis 465554 Nematoda Nematoda 65.5 2.15e-10   NR CAD5218837.1 465554 g21248 i0 74.3 1.00961538461538 35 9 33.7 0 208 312 78 112 CAD5218837.1 unnamed protein product [Bursaphelenchus okinawaensis] diamond 315 65.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus okinawaensis
28094571 28094571 PRJNA725806_P_NODE_39245_length_266_cov_13.917031_g38948_i0 PRJNA725806 39245 266 13.917031 37.01930246 Trichinella pseudospiralis 6337 Nematoda Nematoda 81.6 8.97e-16   NR KRY77849.1 6337 g38948 i0 56.2 2.49248120300752 73 27 82.3 1 226 8 116 183 KRY77849.1 putative ATP-dependent RNA helicase DDX5 [Trichinella pseudospiralis] diamond 663 81.6 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella pseudospiralis
28325770 28325770 PRJNA725806_P_NODE_96406_length_200_cov_1.779141_g96104_i0 PRJNA725806 96406 200 1.779141 3.558282 Rhabditida 6236 Nematoda Nematoda 62.4 5.38e-11   NR RCN38483.1 29170 g96104 i0 75.8 2.175 33 8 49.5 0 52 150 39 71 RCN38483.1 hypothetical protein ANCCAN_15620 [Ancylostoma caninum] diamond 435 62.8 0.993630573248408 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Ancylostoma Ancylostoma caninum
28410354 28410354 PRJNA725806_P_NODE_117286_length_186_cov_1.557047_g116984_i0 PRJNA725806 117286 186 1.557047 2.89610742 Halicephalobus sp. NKZ332 2598192 Nematoda Nematoda 51.6 3.02e-6   NR KAE9547607.1 2598192 g116984 i0 60 0.564516129032258 35 13 56.5 1 166 62 101 134 KAE9547607.1 hypothetical protein FO519_009181 [Halicephalobus sp. NKZ332] diamond 105 51.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Halicephalobus Halicephalobus sp. NKZ332
28504970 28504970 PRJNA725806_P_NODE_138867_length_174_cov_2.233577_g138565_i0 PRJNA725806 138867 174 2.233577 3.88642398 Halicephalobus sp. NKZ332 2598192 Nematoda Nematoda 55.8 2.02e-8   NR KAE9556153.1 2598192 g138565 i0 83.3 0.413793103448276 24 4 41.4 0 2 73 62 85 KAE9556153.1 hypothetical protein FO519_000641 [Halicephalobus sp. NKZ332] diamond 72 55.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Halicephalobus Halicephalobus sp. NKZ332
29041964 29041964 PRJNA725806_P_NODE_153608_length_167_cov_2.269231_g153306_i0 PRJNA725806 153608 167 2.269231 3.78961577 Cylicocyclus nassatus 53992 Nematoda Nematoda 42.4 0.0183   NR CAJ0607780.1 53992 g153306 i0 43.2 0.790419161676647 44 25 79 0 34 165 67 110 CAJ0607780.1 unnamed protein product [Cylicocyclus nassatus] diamond 132 42.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongylidae Cylicocyclus Cylicocyclus nassatus
29483571 29483571 PRJNA725806_P_NODE_22650_length_308_cov_3.922509_g22354_i0 PRJNA725806 22650 308 3.922509 12.08132772 Caenorhabditis elegans 6239 Nematoda Nematoda 44.3 0.0168   NR NP_001361956.1 6239 g22354 i0 37 0.525974025974026 54 34 52.6 0 280 119 9 62 NP_001361956.1 Prion-like-(Q/N-rich)-domain-bearing protein [Caenorhabditis elegans] diamond 162 44.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
29525835 29525835 PRJNA725806_P_NODE_11130_length_365_cov_6.457317_g10842_i0 PRJNA725806 11130 365 6.457317 23.56920705 Rhabditida 6236 Nematoda Nematoda 66.6 3.31e-10   NR KIH58127.1 51022 g10842 i0 83.3 1.44657534246575 36 6 29.6 0 208 101 236 271 KIH58127.1 putative GTP-binding protein YchF [Ancylostoma duodenale] diamond 528 66.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Ancylostoma Ancylostoma duodenale
29641334 29641334 PRJNA725806_P_NODE_112430_length_189_cov_1.572368_g112128_i0 PRJNA725806 112430 189 1.572368 2.97177552 Trichuris suis 68888 Nematoda Nematoda 73.2 3.34e-13   NR KFD60227.1 68888 g112128 i0 54.8 2.98412698412698 62 28 98.4 0 187 2 997 1058 KFD60227.1 hypothetical protein M514_27597 [Trichuris suis] diamond 564 73.2 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
29831110 29831110 PRJNA725806_P_NODE_39371_length_266_cov_6.550218_g39074_i0 PRJNA725806 39371 266 6.550218 17.42357988 Dictyocaulus viviparus 29172 Nematoda Nematoda 43.1 0.0338   NR KJH41805.1 29172 g39074 i0 35.8 0.597744360902256 53 33 58.6 1 52 207 272 324 KJH41805.1 homeobox domain protein [Dictyocaulus viviparus] diamond 159 43.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Metastrongylidae Dictyocaulus Dictyocaulus viviparus
29862669 29862669 PRJNA725806_P_NODE_147711_length_170_cov_1.172932_g147409_i0 PRJNA725806 147711 170 1.172932 1.9939844 Trichuris suis 68888 Nematoda Nematoda 50.4 2.63e-5   NR KFD61048.1 68888 g147409 i0 45.3 0.935294117647059 53 28 93.5 1 170 12 58 109 KFD61048.1 hypothetical protein M514_08442 [Trichuris suis] diamond 159 50.4 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
29999569 29999569 PRJNA725806_P_NODE_151331_length_168_cov_2.679389_g151029_i0 PRJNA725806 151331 168 2.679389 4.50137352 Metazoa 33208 Nematoda Nematoda 51.2 8.31e-6   NR KJH51608.1 29172 g151029 i0 70 7.96428571428571 30 9 53.6 0 1 90 170 199 KJH51608.1 Mnd1 family protein [Dictyocaulus viviparus] diamond 1338 51.6 0.992248062015504 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Metastrongylidae Dictyocaulus Dictyocaulus viviparus
29999583 29999583 PRJNA725806_P_NODE_67531_length_226_cov_2.349206_g67231_i0 PRJNA725806 67531 226 2.349206 5.30920556 Rhabditida 6236 Nematoda Nematoda 77.4 1.04e-14   NR CAD5235498.1 6326 g67231 i0 57.6 7.0353982300885 59 25 78.3 0 13 189 240 298 CAD5235498.1 unnamed protein product [Bursaphelenchus xylophilus] diamond 1590 77.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus
30220483 30220483 PRJNA725806_P_NODE_165352_length_162_cov_1.080000_g165050_i0 PRJNA725806 165352 162 1.08 1.7496 Metazoa 33208 Nematoda Nematoda 83.6 1.11e-17   NR VDM28076.1 6265 g165050 i0 70.6 14.9444444444444 51 15 94.4 0 161 9 203 253 VDM28076.1 unnamed protein product [Toxocara canis] diamond 2421 84.3 0.991696322657177 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis
30273709 30273709 PRJNA725806_P_NODE_118832_length_185_cov_1.952703_g118530_i0 PRJNA725806 118832 185 1.952703 3.61250055 Caenorhabditis briggsae 6238 Nematoda Nematoda 57.8 8.34e-8   NR XP_045092334.1 6238 g118530 i0 41.1 2.72432432432432 56 33 90.8 0 9 176 7 62 XP_045092334.1 Protein CBR-SRB-3 [Caenorhabditis briggsae] diamond 504 57.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
30378938 30378938 PRJNA725806_P_NODE_26512_length_296_cov_3.501931_g26215_i0 PRJNA725806 26512 296 3.501931 10.36571576 Metazoa 33208 Nematoda Nematoda 48.9 4.77e-4   NR VDM40661.1 6265 g26215 i0 39.2 6.10135135135135 74 40 75 2 244 23 617 685 VDM40661.1 unnamed protein product [Toxocara canis] diamond 1806 49.3 0.991886409736308 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis
30694479 30694479 PRJNA725806_P_NODE_35953_length_273_cov_6.233051_g35656_i0 PRJNA725806 35953 273 6.233051 17.01622923 Metazoa 33208 Nematoda Nematoda 151 3.15e-41   NR VBB29297.1 6277 g35656 i0 98.6 98.4615384615385 70 1 76.9 0 212 3 257 326 VBB29297.1 unnamed protein product [Acanthocheilonema viteae] diamond 26880 152 0.993421052631579 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Acanthocheilonema Acanthocheilonema viteae
31042419 31042419 PRJNA725806_P_NODE_141955_length_172_cov_6.770370_g141653_i0 PRJNA725806 141955 172 6.77037 11.6450364 Rhabditida 6236 Nematoda Nematoda 56.2 2.51e-7   NR KAI6187892.1 269767 g141653 i0 51.1 3.47093023255814 47 23 82 0 25 165 412 458 KAI6187892.1 Protein kinase domain-containing protein [Aphelenchoides besseyi] diamond 597 56.6 0.992932862190813 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides besseyi
31980410 31980410 PRJNA725806_P_NODE_5618_length_430_cov_5.722646_g5336_i0 PRJNA725806 5618 430 5.722646 24.6073778 Steinernema carpocapsae 34508 Nematoda Nematoda 47 6.32e-4   NR TKR92761.1 34508 g5336 i0 47.4 0.265116279069767 38 20 26.5 0 253 366 35 72 TKR92761.1 hypothetical protein L596_007346 [Steinernema carpocapsae] diamond 114 47 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Steinernematidae Steinernema Steinernema carpocapsae
32265505 32265505 PRJNA725806_P_NODE_19198_length_321_cov_2.848592_g18904_i0 PRJNA725806 19198 321 2.848592 9.14398032 Toxocara canis 6265 Nematoda Nematoda 75.5 1.37e-13   NR VDM50156.1 6265 g18904 i0 63.3 4.57009345794393 49 18 45.8 0 157 303 244 292 VDM50156.1 unnamed protein product [Toxocara canis] diamond 1467 75.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis
32560612 32560612 PRJNA725806_P_NODE_123019_length_182_cov_6.586207_g122717_i0 PRJNA725806 123019 182 6.586207 11.98689674 Metazoa 33208 Nematoda Nematoda 53.1 3.54e-6   NR KAH7722381.1 70226 g122717 i0 51.9 11.8021978021978 52 25 85.7 0 20 175 1558 1609 KAH7722381.1 ATP-binding cassette sub-family A member 3-like [Aphelenchoides avenae] diamond 2148 53.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides avenae
32896281 32896281 PRJNA725806_P_NODE_133800_length_176_cov_8.733813_g133498_i0 PRJNA725806 133800 176 8.733813 15.37151088 Strongyloides ratti 34506 Nematoda Nematoda 58.9 2.94e-8   NR XP_024510637.1 34506 g133498 i0 50 1.875 54 24 86.9 1 23 175 357 410 XP_024510637.1 Acyltransferase 3 domain and Nose resistant-to-fluoxetine protein, N-terminal domain-containing protein [Strongyloides ratti] diamond 330 58.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;