RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA725806" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA725806 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26672071 26672071 PRJNA725806_P_NODE_117201_length_186_cov_1.812081_g116899_i0 PRJNA725806 117201 186 1.812081 3.37047066 Mycoplasmopsis arginini 2094 Bacteria Bacteria 45.1 0.00103   NR MDI3350356.1 2094 g116899 i0 79.2 0.387096774193548 24 5 38.7 0 150 79 1 24 MDI3350356.1 hypothetical protein [Mycoplasmopsis arginini] diamond 72 45.1 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis arginini
27273548 27273548 PRJNA725806_P_NODE_66983_length_226_cov_8.063492_g66683_i0 PRJNA725806 66983 226 8.063492 18.22349192 Mycoplasmatota bacterium 2231116 Bacteria Bacteria 42.4 0.0129   NR MCI5521490.1 2231116 g66683 i0 46.3 1.10176991150442 41 22 54.4 0 138 16 3 43 MCI5521490.1 ASCH domain-containing protein [Mycoplasmatota bacterium] diamond 249 42.4 1 Bacteria   Bacillati Mycoplasmatota         Mycoplasmatota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;