RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA725806" and tax_phylum = "Gemmatimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA725806 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27463214 27463214 PRJNA725806_P_NODE_107643_length_192_cov_2.509677_g107341_i0 PRJNA725806 107643 192 2.509677 4.81857984 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 44.3 0.0054   NR MEJ2216929.1 2026742 g107341 i0 35.5 0.96875 62 39 95.3 1 8 190 80 141 MEJ2216929.1 penicillin acylase family protein [Gemmatimonadota bacterium] diamond 186 44.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
28315688 28315688 PRJNA725806_P_NODE_80646_length_213_cov_1.920455_g80345_i0 PRJNA725806 80646 213 1.920455 4.09056915 Longimicrobium sp. 2029185 Bacteria Bacteria 43.5 0.0106   NR WP_325309941.1 2029185 g80345 i0 48.6 1.09859154929577 37 19 52.1 0 97 207 22 58 WP_325309941.1 Uma2 family endonuclease [Longimicrobium sp.] diamond 234 43.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
29389234 29389234 PRJNA725806_P_NODE_106049_length_193_cov_2.955128_g105747_i0 PRJNA725806 106049 193 2.955128 5.70339704 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 55.8 4.13e-7   NR MDQ3224110.1 2026742 g105747 i0 56 0.77720207253886 50 21 76.2 1 45 191 8 57 MDQ3224110.1 hypothetical protein [Gemmatimonadota bacterium] diamond 150 55.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
29389291 29389291 PRJNA725806_P_NODE_97849_length_199_cov_1.438272_g97547_i0 PRJNA725806 97849 199 1.438272 2.86216128 Longimicrobium sp. 2029185 Bacteria Bacteria 42.4 0.0292   NR HEU4457194.1 2029185 g97547 i0 41.8 1.01005025125628 67 35 99.5 3 199 2 169 232 HEU4457194.1 CheR family methyltransferase [Longimicrobium sp.] diamond 201 42.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;