RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

17 rows where analysis = "diamond", bioproject = "PRJNA725806" and tax_phylum = "Echinodermata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 17 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA725806 · 17 ✖

analysis 1

  • diamond · 17 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27020651 27020651 PRJNA725806_P_NODE_192402_length_151_cov_2.692982_g192100_i0 PRJNA725806 192402 151 2.692982 4.06640282 Diadema antillarum 105358 Echinodermata other_Eukaryota 70.9 1.28e-12   NR XP_071502567.1 105358 g192100 i0 61.2 0.973509933774834 49 19 97.4 0 2 148 286 334 XP_071502567.1 insulin-degrading enzyme-like [Diadema antillarum] diamond 147 70.9 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Diadematoida Diadematidae Diadema Diadema antillarum
27652700 27652700 PRJNA725806_P_NODE_46244_length_254_cov_8.188940_g45947_i0 PRJNA725806 46244 254 8.18894 20.7999076 Anneissia japonica 1529436 Echinodermata other_Eukaryota 43.9 0.0167   NR XP_033109815.1 1529436 g45947 i0 36.6 0.838582677165354 71 42 82.7 2 26 235 545 613 XP_033109815.1 pentatricopeptide repeat domain-containing protein 3, mitochondrial-like [Anneissia japonica] diamond 213 43.9 1 Eukaryota Opisthokonta Metazoa Echinodermata Crinoidea Comatulida Comatulidae Anneissia Anneissia japonica
28410407 28410407 PRJNA725806_P_NODE_78826_length_214_cov_7.305085_g78525_i0 PRJNA725806 78826 214 7.305085 15.6328819 Lytechinus variegatus 7654 Echinodermata other_Eukaryota 77 2.12e-14   NR XP_041457071.1 7654 g78525 i0 67.3 0.771028037383178 55 9 64.5 1 73 210 439 493 XP_041457071.1 putative phospholipase B-like 2 [Lytechinus variegatus] diamond 165 77 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus
28410413 28410413 PRJNA725806_P_NODE_89366_length_205_cov_5.851190_g89064_i0 PRJNA725806 89366 205 5.85119 11.9949395 Anneissia japonica 1529436 Echinodermata other_Eukaryota 68.6 5.71e-12   NR XP_033123873.1 1529436 g89064 i0 87.5 1.40487804878049 32 4 46.8 0 164 69 12 43 XP_033123873.1 methylthioribulose-1-phosphate dehydratase-like [Anneissia japonica] diamond 288 68.6 1 Eukaryota Opisthokonta Metazoa Echinodermata Crinoidea Comatulida Comatulidae Anneissia Anneissia japonica
28663039 28663039 PRJNA725806_P_NODE_95967_length_200_cov_3.809816_g95665_i0 PRJNA725806 95967 200 3.809816 7.619632 Patiria miniata 46514 Echinodermata other_Eukaryota 57.4 1.43e-7   NR XP_038078323.1 46514 g95665 i0 74.2 0.465 31 8 46.5 0 95 3 140 170 XP_038078323.1 polycomb protein SCMH1-like [Patiria miniata] diamond 93 57.4 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata
28947294 28947294 PRJNA725806_P_NODE_126028_length_181_cov_1.298611_g125726_i0 PRJNA725806 126028 181 1.298611 2.35048591 Holothuria leucospilota 206669 Echinodermata other_Eukaryota 51.2 1.69e-5   NR KAJ8051046.1 206669 g125726 i0 56.3 1.59116022099448 32 14 53 0 4 99 73 104 KAJ8051046.1 hypothetical protein HOLleu_04468 [Holothuria leucospilota] diamond 288 51.2 1 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Holothuriidae Holothuria Holothuria leucospilota
29294377 29294377 PRJNA725806_P_NODE_56609_length_239_cov_4.113861_g56312_i0 PRJNA725806 56609 239 4.113861 9.83212779 Patiria miniata 46514 Echinodermata other_Eukaryota 47.8 6.13e-4   NR XP_038052454.1 46514 g56312 i0 58.1 0.702928870292887 31 13 38.9 0 2 94 1 31 XP_038052454.1 zinc finger protein 729-like [Patiria miniata] diamond 168 47.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata
30052106 30052106 PRJNA725806_P_NODE_26411_length_296_cov_5.590734_g26114_i0 PRJNA725806 26411 296 5.590734 16.54857264 Lytechinus variegatus 7654 Echinodermata other_Eukaryota 43.9 0.0264   NR XP_041454220.1 7654 g26114 i0 32.9 0.800675675675676 79 47 80.1 2 276 40 46 118 XP_041454220.1 pollen-specific leucine-rich repeat extensin-like protein 1 isoform X2 [Lytechinus variegatus] diamond 237 43.9 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus
30273727 30273727 PRJNA725806_P_NODE_3612_length_479_cov_5.135747_g3347_i0 PRJNA725806 3612 479 5.135747 24.60022813 Anneissia japonica 1529436 Echinodermata other_Eukaryota 56.2 8.26e-6   NR XP_033102039.1 1529436 g3347 i0 26.8 2.01043841336117 97 71 60.8 0 431 141 470 566 XP_033102039.1 uncharacterized protein LOC117105102 [Anneissia japonica] diamond 963 56.2 1 Eukaryota Opisthokonta Metazoa Echinodermata Crinoidea Comatulida Comatulidae Anneissia Anneissia japonica
31642635 31642635 PRJNA725806_P_NODE_108516_length_191_cov_5.668831_g108214_i0 PRJNA725806 108516 191 5.668831 10.82746721 Aspidochirotida 7682 Echinodermata other_Eukaryota 94 1.7e-20   NR KAJ8037346.1 206669 g108214 i0 92.3 2.45026178010471 52 4 81.7 0 157 2 682 733 KAJ8037346.1 Sodium/calcium exchanger 3 [Holothuria leucospilota] diamond 468 94 1 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Holothuriidae Holothuria Holothuria leucospilota
31917171 31917171 PRJNA725806_P_NODE_107157_length_192_cov_4.877419_g106855_i0 PRJNA725806 107157 192 4.877419 9.36464448 Asterias rubens 7604 Echinodermata other_Eukaryota 45.4 0.00215   NR XP_033631004.1 7604 g106855 i0 44.4 0.84375 54 30 84.4 0 31 192 259 312 XP_033631004.1 retinoid-inducible serine carboxypeptidase-like isoform X2 [Asterias rubens] diamond 162 45.4 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Forcipulatida Asteriidae Asterias Asterias rubens
31917198 31917198 PRJNA725806_P_NODE_38217_length_269_cov_1.982759_g37920_i0 PRJNA725806 38217 269 1.982759 5.33362171 Lytechinus variegatus 7654 Echinodermata other_Eukaryota 46.6 0.00227   NR XP_041467375.1 7654 g37920 i0 75.9 0.323420074349442 29 7 32.3 0 181 267 11 39 XP_041467375.1 transcription factor Sp4-like [Lytechinus variegatus] diamond 87 46.6 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus
32022487 32022487 PRJNA725806_P_NODE_164358_length_162_cov_3.048000_g164056_i0 PRJNA725806 164358 162 3.048 4.93776 root 1 Root_unresolved Root_unresolved 44.7 0.00255   NR KAJ8025067.1 206669 g164056 i0 45 2.81481481481481 40 19 74.1 1 160 41 343 379 KAJ8025067.1 Acyl-CoA synthetase family member 2, mitochondrial [Holothuria leucospilota] diamond 456 44.7 1 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Holothuriidae Holothuria Holothuria leucospilota
32107006 32107006 PRJNA725806_P_NODE_35378_length_274_cov_15.497890_g35081_i0 PRJNA725806 35378 274 15.49789 42.4642186 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 73.6 7.89e-13   NR XP_030841101.1 7668 g35081 i0 63.8 0.514598540145985 47 17 51.5 0 234 94 37 83 XP_030841101.1 fibropellin-1 [Strongylocentrotus purpuratus] diamond 141 73.6 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
32117473 32117473 PRJNA725806_P_NODE_128738_length_179_cov_4.697183_g128436_i0 PRJNA725806 128738 179 4.697183 8.40795757 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 67 4.33e-11   NR XP_041485382.1 7654 g128436 i0 76.3 19.4078212290503 38 9 63.7 0 168 55 911 948 XP_041485382.1 piwi-like protein 1 [Lytechinus variegatus] diamond 3474 67.4 0.99406528189911 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus
32170521 32170521 PRJNA725806_P_NODE_111218_length_189_cov_9.960526_g110916_i0 PRJNA725806 111218 189 9.960526 18.82539414 Patiria miniata 46514 Echinodermata other_Eukaryota 43.1 0.0132   NR XP_038056081.1 46514 g110916 i0 60.7 1.82539682539683 28 11 44.4 0 151 68 402 429 XP_038056081.1 fibroblast growth factor receptor 2-like [Patiria miniata] diamond 345 43.1 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata
32843640 32843640 PRJNA725806_P_NODE_113220_length_188_cov_4.980132_g112918_i0 PRJNA725806 113220 188 4.980132 9.3626481600000009 Opisthokonta 33154 Echinodermata other_Eukaryota 49.7 6.3e-5   NR KAJ8025173.1 206669 g112918 i0 39.2 1.57978723404255 51 31 81.4 0 157 5 170 220 KAJ8025173.1 BRCA1-associated RING domain protein 1 [Holothuria leucospilota] diamond 297 49.7 1 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Holothuriidae Holothuria Holothuria leucospilota

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;