RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA725806" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA725806 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19838883 19838883 PRJNA725806_P_NODE_53236_length_244_cov_1.483092_g52939_i0 PRJNA725806 53236 244 1.483092 3.61874448 Armatimonadota bacterium 2033014 Bacteria Bacteria 127 7.649999999999998e-32   NR MES2462628.1 2033014 g52939 i0 72.5 0.983606557377049 80 22 98.4 0 241 2 250 329 MES2462628.1 hypothetical protein [Armatimonadota bacterium] diamond 240 127 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
27115302 27115302 PRJNA725806_P_NODE_95102_length_201_cov_1.792683_g94800_i0 PRJNA725806 95102 201 1.792683 3.60329283 Armatimonadota bacterium 2033014 Bacteria Bacteria 58.2 7.32e-8   NR MBC8138600.1 2033014 g94800 i0 80.6 1.82089552238806 31 6 46.3 0 201 109 299 329 MBC8138600.1 ROK family protein [Armatimonadota bacterium] diamond 366 58.2 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
30620912 30620912 PRJNA725806_P_NODE_47813_length_252_cov_3.186047_g47516_i0 PRJNA725806 47813 252 3.186047 8.02883844 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 42 0.0371   NR HRI43727.1 2682144 g47516 i0 42.9 0.583333333333333 49 26 56 1 68 208 80 128 HRI43727.1 GNAT family N-acetyltransferase [Fimbriimonadaceae bacterium] diamond 147 42 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium
31474459 31474459 PRJNA725806_P_NODE_164996_length_162_cov_1.616000_g164694_i0 PRJNA725806 164996 162 1.616 2.61792 Capsulimonadales bacterium 2971800 Bacteria Bacteria 97.1 8.05e-22   NR MDX1931188.1 2971800 g164694 i0 86.8 0.981481481481482 53 7 98.1 0 160 2 368 420 MDX1931188.1 citramalate synthase [Capsulimonadales bacterium] diamond 159 97.1 1 Bacteria   Bacillati Armatimonadota Armatimonadia Capsulimonadales     Capsulimonadales bacterium
31790430 31790430 PRJNA725806_P_NODE_133197_length_177_cov_1.921429_g132895_i0 PRJNA725806 133197 177 1.921429 3.40092933 Armatimonadota bacterium 2033014 Bacteria Bacteria 61.6 3.27e-9   NR MBM3464536.1 2033014 g132895 i0 49.1 0.898305084745763 53 27 89.8 0 176 18 140 192 MBM3464536.1 hypothetical protein [Armatimonadota bacterium] diamond 159 61.6 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
32896286 32896286 PRJNA725806_P_NODE_153720_length_167_cov_1.976923_g153418_i0 PRJNA725806 153720 167 1.976923 3.30146141 Chthonomonas sp. 2282153 Bacteria Bacteria 42 0.022   NR MBL8060863.1 2282153 g153418 i0 42.9 0.754491017964072 42 19 75.4 1 158 33 164 200 MBL8060863.1 hypothetical protein [Chthonomonas sp.] diamond 126 42 1 Bacteria   Bacillati Armatimonadota Chthonomonadia Chthonomonadales Chthonomonadaceae Chthonomonas Chthonomonas sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;