RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA725806" and tax_phylum = "Apicomplexa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA725806 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27431766 27431766 PRJNA725806_P_NODE_45743_length_255_cov_5.293578_g45446_i0 PRJNA725806 45743 255 5.293578 13.4986239 Plasmodium gallinaceum 5849 SAR_Eukaryotes SAR_Eukaryotes 43.9 0.0173   NR XP_028526556.1 5849 g45446 i0 30.3 0.776470588235294 66 46 77.6 0 246 49 352 417 XP_028526556.1 GPI-anchored wall transfer protein 1, putative [Plasmodium gallinaceum] diamond 198 43.9 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium gallinaceum
27968250 27968250 PRJNA725806_P_NODE_46965_length_253_cov_5.949074_g46668_i0 PRJNA725806 46965 253 5.949074 15.05115722 Babesia caballi 5871 SAR_Eukaryotes SAR_Eukaryotes 43.5 0.0224   NR XP_067713452.1 5871 g46668 i0 40 0.770750988142292 65 38 75.9 1 15 206 950 1014 XP_067713452.1 variant erythrocyte surface antigen-1 family protein [Babesia caballi] diamond 195 43.5 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia caballi
29683266 29683266 PRJNA725806_P_NODE_65710_length_228_cov_2.973822_g65411_i0 PRJNA725806 65710 228 2.973822 6.78031416 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 43.1 0.0227   NR SCL91577.1 5821 g65411 i0 40.7 1.55263157894737 59 33 76.3 2 27 200 724 781 SCL91577.1 conserved Plasmodium membrane protein, unknown function, partial [Plasmodium berghei] diamond 354 43.1 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium berghei

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;