RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA724039" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA724039 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28000014 28000014 PRJNA724039_S_NODE_6365_length_270_cov_1.987124_g6158_i0 PRJNA724039 6365 270 1.987124 5.3652348 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 117 6.44e-29   NR MCU0646502.1 2026741 g6158 i0 62.2 1 90 34 100 0 1 270 190 279 MCU0646502.1 metallophosphoesterase [Gemmatimonadaceae bacterium] diamond 270 117 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
29136717 29136717 PRJNA724039_S_NODE_1129_length_810_cov_4.652005_g981_i0 PRJNA724039 1129 810 4.652005 37.6812405 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 103 5.77e-22   NR NIM48047.1 2448054 g981 i0 30.6 1.16296296296296 314 161 97.8 10 14 805 19 325 NIM48047.1 hypothetical protein [Gemmatimonadales bacterium] diamond 942 103 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
29831062 29831062 PRJNA724039_S_NODE_5851_length_285_cov_4.616935_g5644_i0 PRJNA724039 5851 285 4.616935 13.15826475 Longimicrobiales bacterium 2910168 Bacteria Bacteria 45.4 0.00705   NR HSG49272.1 2910168 g5644 i0 41.1 1.51578947368421 73 35 70.5 3 267 67 471 541 HSG49272.1 hypothetical protein [Longimicrobiales bacterium] diamond 432 45.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium
32612994 32612994 PRJNA724039_S_NODE_2080_length_531_cov_2.026316_g1884_i0 PRJNA724039 2080 531 2.026316 10.75973796 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 169 1.0399999999999999e-46   NR MDZ4257988.1 2448054 g1884 i0 52.2 7.99435028248588 178 82 98.9 1 530 6 121 298 MDZ4257988.1 oligosaccharide flippase family protein [Gemmatimonadales bacterium] diamond 4245 169 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;