RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJNA724039" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA724039 · 7 ✖

analysis 1

  • diamond · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27904809 27904809 PRJNA724039_S_NODE_13385_length_175_cov_1.688406_g13178_i0 PRJNA724039 13385 175 1.688406 2.9547105 Paramecium sonneborni 65129 SAR_Eukaryotes SAR_Eukaryotes 62.8 1.98e-10   NR CAD8127098.1 65129 g13178 i0 71.7 0.788571428571429 46 13 78.9 0 1 138 91 136 CAD8127098.1 unnamed protein product [Paramecium sonneborni] diamond 138 62.8 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium sonneborni
28126166 28126166 PRJNA724039_S_NODE_14825_length_166_cov_0.899225_g14618_i0 PRJNA724039 14825 166 0.899225 1.4927135 Halteria grandinella 5974 SAR_Eukaryotes SAR_Eukaryotes 72.8 8.37e-14   NR TNV71297.1 5974 g14618 i0 63.6 0.993975903614458 55 20 99.4 0 166 2 158 212 TNV71297.1 hypothetical protein FGO68_gene13476 [Halteria grandinella] diamond 165 72.8 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Halteriidae Halteria Halteria grandinella
28578555 28578555 PRJNA724039_S_NODE_13707_length_173_cov_1.279412_g13500_i0 PRJNA724039 13707 173 1.279412 2.21338276 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 49.3 1.57e-5   NR XP_004035553.1 5932 g13500 i0 50 2.20231213872832 44 22 76.3 0 170 39 76 119 XP_004035553.1 hypothetical protein IMG5_097440 [Ichthyophthirius multifiliis] diamond 381 49.3 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida   Ichthyophthirius Ichthyophthirius multifiliis
29736118 29736118 PRJNA724039_S_NODE_17690_length_152_cov_1.260870_g17483_i0 PRJNA724039 17690 152 1.26087 1.9165224 Pseudocohnilembus persalinus 266149 SAR_Eukaryotes SAR_Eukaryotes 75.9 7.19e-16   NR KRX10691.1 266149 g17483 i0 64 0.986842105263158 50 18 98.7 0 150 1 36 85 KRX10691.1 Translation protein SH3-like domain [Pseudocohnilembus persalinus] diamond 150 75.9 1 Eukaryota Sar   Ciliophora Oligohymenophorea Philasterida Pseudocohnilembidae Pseudocohnilembus Pseudocohnilembus persalinus
30463384 30463384 PRJNA724039_S_NODE_17713_length_152_cov_1.069565_g17506_i0 PRJNA724039 17713 152 1.069565 1.6257388 Stylonychia lemnae 5949 SAR_Eukaryotes SAR_Eukaryotes 73.2 1.99e-14   NR CDW79023.1 5949 g17506 i0 76 2.96052631578947 50 12 98.7 0 152 3 34 83 CDW79023.1 ribosomal protein 11a 60s large ribosomal subunit [Stylonychia lemnae] diamond 450 73.2 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae
32360441 32360441 PRJNA724039_S_NODE_6659_length_264_cov_1.647577_g6452_i0 PRJNA724039 6659 264 1.647577 4.34960328 Pseudocohnilembus persalinus 266149 SAR_Eukaryotes SAR_Eukaryotes 82.4 1.74e-17   NR KRX06453.1 266149 g6452 i0 50.6 0.875 77 38 87.5 0 1 231 89 165 KRX06453.1 Ribosomal protein L11, N-terminal [Pseudocohnilembus persalinus] diamond 231 82.4 1 Eukaryota Sar   Ciliophora Oligohymenophorea Philasterida Pseudocohnilembidae Pseudocohnilembus Pseudocohnilembus persalinus
32875188 32875188 PRJNA724039_S_NODE_6100_length_278_cov_1.410788_g5893_i0 PRJNA724039 6100 278 1.410788 3.92199064 Paramecium 5884 SAR_Eukaryotes SAR_Eukaryotes 87.8 5.45e-20   NR CAD8057916.1 5886 g5893 i0 56.7 3.61510791366906 67 29 72.3 0 266 66 33 99 CAD8057916.1 unnamed protein product [Paramecium primaurelia] diamond 1005 87.8 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium primaurelia

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;