RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA724039" and tax_phylum = "Chytridiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA724039 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23664175 23664175 PRJNA724039_S_NODE_16759_length_156_cov_1.176471_g16552_i0 PRJNA724039 16759 156 1.176471 1.83529476 Cladochytrium tenue 1604274 Fungi Fungi 104 4.73e-25   NR KAJ1568125.1 1604274 g16552 i0 96.2 10 52 2 100 0 156 1 111 162 KAJ1568125.1 hypothetical protein HK405_003553 [Cladochytrium tenue] diamond 1560 104 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Cladochytriales Cladochytriaceae Cladochytrium Cladochytrium tenue
27062538 27062538 PRJNA724039_S_NODE_11882_length_187_cov_1.006667_g11675_i0 PRJNA724039 11882 187 1.006667 1.88246729 Chytridiomycota 4761 Fungi Fungi 106 1.62e-26   NR KAI9005244.1 109897 g11675 i0 74.2 11.9358288770053 62 16 99.5 0 1 186 5 66 KAI9005244.1 translation protein SH3-like domain-containing protein [Gaertneriomyces semiglobifer] diamond 2232 106 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Gaertneriomyces Gaertneriomyces semiglobifer
30062442 30062442 PRJNA724039_S_NODE_16291_length_158_cov_1.214876_g16084_i0 PRJNA724039 16291 158 1.214876 1.91950408 Eukaryota 2759 Fungi Fungi 72 1.05e-14   NR KAJ3108517.1 1352834 g16084 i0 68.6 2.92405063291139 51 16 96.8 0 154 2 12 62 KAJ3108517.1 60S ribosomal protein L36 [Phlyctochytrium bullatum] diamond 462 72.4 0.994475138121547 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytridiaceae Phlyctochytrium Phlyctochytrium bullatum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;