RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA724039" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA724039 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2469454 2469454 PRJNA724039_S_NODE_1382_length_690_cov_5.545176_g1215_i0 PRJNA724039 1382 690 5.545176 38.2617144 Cercozoa sp. DMV 1342330 SAR_Eukaryotes SAR_Eukaryotes 355 1.7199999999999995e-118   NR BAN37425.1 1342330 g1215 i0 73.7 2.92173913043478 224 59 97.4 0 1 672 204 427 BAN37425.1 elongation factor 1-alpha [Cercozoa sp. DMV] diamond 2016 355 1 Eukaryota Sar   Cercozoa         Cercozoa sp. DMV
27621035 27621035 PRJNA724039_S_NODE_3464_length_390_cov_2.371105_g3257_i0 PRJNA724039 3464 390 2.371105 9.2473095 Heteromita sp. PRA-74 323453 SAR_Eukaryotes SAR_Eukaryotes 118 4.35e-31   NR ADK47156.1 323453 g3257 i0 100 0.438461538461538 57 0 43.8 0 389 219 89 145 ADK47156.1 ribosomal protein S23a [Heteromita sp. PRA-74] diamond 171 118 1 Eukaryota Sar   Cercozoa   Cercomonadida Heteromitidae Heteromita Heteromita sp. PRA-74
32518611 32518611 PRJNA724039_S_NODE_8399_length_228_cov_2.340314_g8192_i0 PRJNA724039 8399 228 2.340314 5.33591592 Heteromita sp. PRA-74 323453 SAR_Eukaryotes SAR_Eukaryotes 147 6.4e-44   NR ADK26622.1 323453 g8192 i0 93.3 0.986842105263158 75 5 98.7 0 226 2 46 120 ADK26622.1 rps22a [Heteromita sp. PRA-74] diamond 225 147 1 Eukaryota Sar   Cercozoa   Cercomonadida Heteromitidae Heteromita Heteromita sp. PRA-74

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;