RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA724039" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA724039 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26873030 26873030 PRJNA724039_S_NODE_10821_length_196_cov_2.924528_g10614_i0 PRJNA724039 10821 196 2.924528 5.73207488 Bacteria 2 Bacteria Bacteria 65.1 2.23e-10   NR WP_259617642.1 1229154 g10614 i0 46.2 4.83673469387755 65 35 99.5 0 1 195 70 134 WP_259617642.1 biotin-dependent carboxyltransferase family protein [Paenibacillus doosanensis] diamond 948 65.5 0.993893129770992 Bacteria   Bacillati Bacillota Bacilli Bacillales Paenibacillaceae Paenibacillus Paenibacillus doosanensis
27473400 27473400 PRJNA724039_S_NODE_4823_length_320_cov_2.353357_g4616_i0 PRJNA724039 4823 320 2.353357 7.5307424 Bacteria 2 Bacteria Bacteria 79 2.02e-15   NR WP_115856743.1 46127 g4616 i0 45.9 2.11875 74 40 69.4 0 319 98 138 211 WP_115856743.1 pyroglutamyl-peptidase I [Staphylococcus felis] diamond 678 79 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus felis
27883810 27883810 PRJNA724039_S_NODE_8985_length_218_cov_4.408840_g8778_i0 PRJNA724039 8985 218 4.40884 9.6112712 Bacteria 2 Bacteria Bacteria 99 4.21e-25   NR MFK5281896.1 1597 g8778 i0 63.5 2.82110091743119 63 23 86.7 0 30 218 3 65 MFK5281896.1 hypothetical protein [Lacticaseibacillus paracasei] diamond 615 100 0.99 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Lacticaseibacillus Lacticaseibacillus paracasei
28000021 28000021 PRJNA724039_S_NODE_8345_length_229_cov_2.416667_g8138_i0 PRJNA724039 8345 229 2.416667 5.53416743 Clostridia bacterium 2044939 Bacteria Bacteria 55.5 5.54e-7   NR HYF82516.1 2044939 g8138 i0 57.5 1.02183406113537 40 17 52.4 0 108 227 15 54 HYF82516.1 HutD family protein [Clostridia bacterium] diamond 234 55.5 1 Bacteria   Bacillati Bacillota Clostridia       Clostridia bacterium
31853773 31853773 PRJNA724039_S_NODE_17317_length_153_cov_2.982759_g17110_i0 PRJNA724039 17317 153 2.982759 4.56362127 uncultured Anaerotignum sp. 2039243 Bacteria Bacteria 50.8 1.55e-5   NR WP_294680500.1 2039243 g17110 i0 56.1 0.803921568627451 41 18 80.4 0 135 13 419 459 WP_294680500.1 tetratricopeptide repeat protein [uncultured Anaerotignum sp.] diamond 123 50.8 1 Bacteria   Bacillati Bacillota Clostridia Lachnospirales Anaerotignaceae Anaerotignum uncultured Anaerotignum sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;