RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA724039" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA724039 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
711103 711103 PRJNA724039_S_NODE_16761_length_156_cov_1.134454_g16554_i0 PRJNA724039 16761 156 1.134454 1.76974824 Bacillariophyta 2836 SAR_Eukaryotes SAR_Eukaryotes 68.6 3.26e-12   NR EJK47098.1 159749 g16554 i0 58.8 7.78846153846154 51 21 98.1 0 2 154 81 131 EJK47098.1 hypothetical protein THAOC_34210 [Thalassiosira oceanica] diamond 1215 68.9 0.995645863570392 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Thalassiosiraceae Thalassiosira Thalassiosira oceanica
30431804 30431804 PRJNA724039_S_NODE_5733_length_289_cov_1.718254_g5526_i0 PRJNA724039 5733 289 1.718254 4.96575406 Chaetoceros tenuissimus 426638 SAR_Eukaryotes SAR_Eukaryotes 122 6.09e-33   NR GFH59293.1 426638 g5526 i0 61.1 3.9757785467128 95 34 98.6 1 289 5 15 106 GFH59293.1 RL9, ribosomal protein 9 [Chaetoceros tenuissimus] diamond 1149 122 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Chaetocerotales Chaetocerotaceae Chaetoceros Chaetoceros tenuissimus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;