RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJNA724039" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA724039 · 7 ✖

analysis 1

  • diamond · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27305209 27305209 PRJNA724039_S_NODE_17063_length_154_cov_3.273504_g16856_i0 PRJNA724039 17063 154 3.273504 5.04119616 Candidatus Sulfotelmatobacter sp. 2771375 Bacteria Bacteria 41.2 0.0253   NR HET9305486.1 2771375 g16856 i0 51.6 1.20779220779221 31 15 60.4 0 8 100 81 111 HET9305486.1 DUF2127 domain-containing protein [Candidatus Sulfotelmatobacter sp.] diamond 186 41.2 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Candidatus Korobacteraceae Candidatus Sulfotelmatobacter Candidatus Sulfotelmatobacter sp.
28788971 28788971 PRJNA724039_S_NODE_17167_length_154_cov_1.367521_g16960_i0 PRJNA724039 17167 154 1.367521 2.10598234 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 48.9 7.41e-5   NR HZF14297.1 2651171 g16960 i0 45.8 0.935064935064935 48 26 93.5 0 145 2 126 173 HZF14297.1 IPTL-CTERM sorting domain-containing protein [Thermoanaerobaculia bacterium] diamond 144 48.9 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
29010563 29010563 PRJNA724039_S_NODE_14008_length_171_cov_1.164179_g13801_i0 PRJNA724039 14008 171 1.164179 1.99074609 Vicinamibacteria bacterium 2793154 Bacteria Bacteria 42.7 0.0145   NR HLE20026.1 2793154 g13801 i0 43.6 0.964912280701754 55 30 94.7 1 1 162 202 256 HLE20026.1 ABC transporter permease [Vicinamibacteria bacterium] diamond 165 42.7 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria       Vicinamibacteria bacterium
29672909 29672909 PRJNA724039_S_NODE_15890_length_160_cov_1.577236_g15683_i0 PRJNA724039 15890 160 1.577236 2.5235776 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 43.5 0.00601   NR HEY8021067.1 2651171 g15683 i0 45.1 0.95625 51 25 95.6 1 155 3 65 112 HEY8021067.1 ParB/RepB/Spo0J family partition protein [Thermoanaerobaculia bacterium] diamond 153 43.5 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
31105089 31105089 PRJNA724039_S_NODE_18215_length_150_cov_1.008850_g18008_i0 PRJNA724039 18215 150 1.00885 1.513275 Bacteria 2 Bacteria Bacteria 45.4 0.00114   NR MBW8894768.1 1978231 g18008 i0 51.1 2.62 45 22 90 0 14 148 327 371 MBW8894768.1 ABC transporter permease [Acidobacteriota bacterium] diamond 393 45.8 0.991266375545852 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
31221011 31221011 PRJNA724039_S_NODE_9235_length_215_cov_1.573034_g9028_i0 PRJNA724039 9235 215 1.573034 3.3820231 Acidobacteriota bacterium 1978231 Bacteria Bacteria 60.8 9.64e-9   NR MEM9553623.1 1978231 g9028 i0 46.4 0.781395348837209 56 26 72.6 1 3 158 287 342 MEM9553623.1 thaumatin family protein [Acidobacteriota bacterium] diamond 168 60.8 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
31347919 31347919 PRJNA724039_S_NODE_17196_length_154_cov_1.290598_g16989_i0 PRJNA724039 17196 154 1.290598 1.98752092 Candidatus Sulfopaludibacter sp. SbA3 2043164 Bacteria Bacteria 41.2 0.0395   NR SPE42860.1 2043164 g16989 i0 40.4 0.915584415584416 47 24 87.7 2 145 11 343 387 SPE42860.1 hypothetical protein SBA3_690046 [Candidatus Sulfopaludibacter sp. SbA3] diamond 141 41.2 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Solibacteraceae Candidatus Sulfopaludibacter Candidatus Sulfopaludibacter sp. SbA3

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;