RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJNA724039" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 7 ✖

bioproject 1

  • PRJNA724039 · 7 ✖

analysis 1

  • diamond · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26714037 26714037 PRJNA724039_S_NODE_11501_length_190_cov_1.692810_g11294_i0 PRJNA724039 11501 190 1.69281 3.216339 Pseudomonadati 3379134 Bacteria Bacteria 47.8 2.08e-4   NR MBN1442006.1 2026780 g11294 i0 44.4 3.25263157894737 54 21 85.3 1 3 164 153 197 MBN1442006.1 TraR/DksA family transcriptional regulator [Planctomycetota bacterium] diamond 618 47.8 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
26862706 26862706 PRJNA724039_S_NODE_17061_length_154_cov_3.307692_g16854_i0 PRJNA724039 17061 154 3.307692 5.09384568 Planctomycetota bacterium 2026780 Bacteria Bacteria 46.2 1.47e-4   NR GMU84755.1 2026780 g16854 i0 64.5 1.28571428571429 31 11 60.4 0 11 103 49 79 GMU84755.1 MAG: hypothetical protein AMXMBFR47_46240 [Planctomycetota bacterium] diamond 198 46.2 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
27716025 27716025 PRJNA724039_S_NODE_17644_length_152_cov_1.652174_g17437_i0 PRJNA724039 17644 152 1.652174 2.51130448 Gemmataceae bacterium 2052164 Bacteria Bacteria 79.7 6.79e-16   NR MBX9625399.1 2052164 g17437 i0 71.4 5.80263157894737 49 14 96.7 0 149 3 282 330 MBX9625399.1 hypothetical protein [Gemmataceae bacterium] diamond 882 79.7 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   Gemmataceae bacterium
28073211 28073211 PRJNA724039_S_NODE_13525_length_174_cov_1.963504_g13318_i0 PRJNA724039 13525 174 1.963504 3.41649696 Pseudomonadati 3379134 Bacteria Bacteria 104 5.47e-25   NR HTL69415.1 1961806 g13318 i0 85.7 14.6379310344828 56 8 96.6 0 169 2 45 100 HTL69415.1 alkene reductase [Lacunisphaera sp.] diamond 2547 104 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Lacunisphaera Lacunisphaera sp.
28157940 28157940 PRJNA724039_S_NODE_17125_length_154_cov_1.846154_g16918_i0 PRJNA724039 17125 154 1.846154 2.84307716 Lentimonas sp. 3100297 Bacteria Bacteria 83.6 5.18e-18   NR MEN8662823.1 3100297 g16918 i0 78.7 1.87012987012987 47 10 91.6 0 150 10 28 74 MEN8662823.1 ABC transporter ATP-binding protein [Lentimonas sp.] diamond 288 83.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota       Lentimonas Lentimonas sp.
29231350 29231350 PRJNA724039_S_NODE_11129_length_193_cov_3.211538_g10922_i0 PRJNA724039 11129 193 3.211538 6.19826834 Planctomycetota bacterium 2026780 Bacteria Bacteria 47.8 3.35e-4   NR MCC5823099.1 2026780 g10922 i0 39.4 2.02072538860104 66 38 99.5 1 193 2 473 538 MCC5823099.1 serine/threonine protein kinase [Planctomycetota bacterium] diamond 390 47.8 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
32581711 32581711 PRJNA724039_S_NODE_16119_length_159_cov_1.180328_g15912_i0 PRJNA724039 16119 159 1.180328 1.87672152 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 73.6 4.09e-14   NR MBT3842500.1 2026799 g15912 i0 69.2 2.94339622641509 52 16 98.1 0 4 159 122 173 MBT3842500.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 468 73.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;