RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA724011" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA724011 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
32201939 32201939 PRJNA724011_P_NODE_75998_length_286_cov_1.446009_g74975_i0 PRJNA724011 75998 286 1.446009 4.13558574 Rhizamoeba sp. ATCC 5 2909502 Tubulinea other_Eukaryota 50.1 1.64e-4   NR AEH95280.1 497999 g74975 i0 37.5 1.00699300699301 96 54 97.6 3 3 281 764 856 AEH95280.1 RNA polymerase II largest subunit, partial [Rhizamoeba sp. ATCC 50933] diamond 288 50.1 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Rhizamoeba Rhizamoeba sp. ATCC 50933
32391697 32391697 PRJNA724011_P_NODE_47159_length_380_cov_0.876221_g46136_i0 PRJNA724011 47159 380 0.876221 3.3296398 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 135 8.46e-37   NR AAY87037.1 5778 g46136 i0 49.6 0.939473684210526 119 60 93.9 0 358 2 121 239 AAY87037.1 CmfA-like protein, partial [Vermamoeba vermiformis] diamond 357 135 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;