RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA724011" and tax_phylum = "Candidatus Peregrinibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Peregrinibacteriota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA724011 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27589342 27589342 PRJNA724011_P_NODE_13984_length_820_cov_2.728246_g13055_i0 PRJNA724011 13984 820 2.728246 22.3716172 Candidatus Peregrinibacteria bacterium 2030811 Bacteria Bacteria 55.5 2.15e-5   NR MBD3330916.1 2030811 g13055 i0 40 0.347560975609756 95 55 34.8 2 27 311 73 165 MBD3330916.1 MFS transporter [Candidatus Peregrinibacteria bacterium] diamond 285 55.5 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota         Candidatus Peregrinibacteria bacterium
30747295 30747295 PRJNA724011_P_NODE_4014_length_1538_cov_21.827986_g2171_i3 PRJNA724011 4014 1538 21.827986 335.71442468 Candidatus Peregrinibacteria bacterium 2030811 Bacteria Bacteria 397 9.499999999999996e-131   NR MBD3270833.1 2030811 g2171 i3 46.7 9.00195058517555 460 234 89.5 8 91 1467 4 453 MBD3270833.1 deoxyribodipyrimidine photo-lyase [Candidatus Peregrinibacteria bacterium] diamond 13845 397 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota         Candidatus Peregrinibacteria bacterium
32201907 32201907 PRJNA724011_P_NODE_5678_length_1318_cov_3.604819_g5112_i0 PRJNA724011 5678 1318 3.604819 47.51151442 Candidatus Peregrinibacteria bacterium 2030811 Bacteria Bacteria 90.9 2.32e-16   NR MBI5412353.1 2030811 g5112 i0 54.3 0.880880121396055 81 37 18.4 0 5 247 212 292 MBI5412353.1 uridine phosphorylase [Candidatus Peregrinibacteria bacterium] diamond 1161 90.9 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota         Candidatus Peregrinibacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;