RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA722925" and tax_phylum = "Chlorophyta"

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tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA722925 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28252151 28252151 PRJNA722925_S_NODE_5106_length_201_cov_1.237805_g5043_i0 PRJNA722925 5106 201 1.237805 2.48798805 Picochlorum sp. BPE23 2696299 Plants Plants 52.8 3.12e-6   NR KAI8102971.1 2696299 g5043 i0 58 0.746268656716418 50 21 74.6 0 8 157 125 174 KAI8102971.1 hypothetical protein M9434_005759 [Picochlorum sp. BPE23] diamond 150 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae     Picochlorum Picochlorum sp. BPE23
32581574 32581574 PRJNA722925_S_NODE_1879_length_314_cov_2.231047_g1816_i0 PRJNA722925 1879 314 2.231047 7.00548758 Pycnococcus provasolii 41880 Plants Plants 95.5 4.11e-22   NR GHP02579.1 41880 g1816 i0 60 11.484076433121 85 32 81.2 2 307 53 94 176 GHP02579.1 60S ribosomal protein L18 [Pycnococcus provasolii] diamond 3606 96.3 0.991692627206646 Eukaryota   Viridiplantae Chlorophyta Pseudoscourfieldiophyceae Pseudoscourfieldiales Pycnococcaceae Pycnococcus Pycnococcus provasolii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;