RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA721440" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA721440 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28315448 28315448 PRJNA721440_S_NODE_17046_length_169_cov_0.866667_g16920_i0 PRJNA721440 17046 169 0.866667 1.46466723 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 61.2 4.15e-9   NR XP_002677176.1 5762 g16920 i0 59.6 3.60355029585799 52 20 90.5 1 13 165 114 165 XP_002677176.1 uncharacterized protein NAEGRDRAFT_67572 [Naegleria gruberi] diamond 609 61.2 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
31948508 31948508 PRJNA721440_S_NODE_2577_length_349_cov_9.680000_g2451_i0 PRJNA721440 2577 349 9.68 33.7832 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 127 6.1e-35   NR XP_002671786.1 5762 g2451 i0 54.4 1.9512893982808 114 51 97.1 1 349 11 26 139 XP_002671786.1 uncharacterized protein NAEGRDRAFT_73036 [Naegleria gruberi] diamond 681 127 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;