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contig_metadata

25 rows where analysis = "diamond", bioproject = "PRJNA721440" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 25 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA721440 · 25 ✖

analysis 1

  • diamond · 25 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26798830 26798830 PRJNA721440_S_NODE_3281_length_314_cov_5.479245_g3155_i0 PRJNA721440 3281 314 5.479245 17.2048293 Ciona intestinalis 7719 Chordata Chordata 74.3 6.84e-13   NR XP_002120963.1 7719 g3155 i0 62.2 0.429936305732484 45 17 43 0 213 79 565 609 XP_002120963.1 alpha-amylase 2-like [Ciona intestinalis] diamond 135 74.3 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Cionidae Ciona Ciona intestinalis
27178294 27178294 PRJNA721440_S_NODE_12602_length_188_cov_1.122302_g12476_i0 PRJNA721440 12602 188 1.122302 2.10992776 Branchiostoma floridae 7739 Chordata Chordata 48.5 1.62e-4   NR XP_035681117.1 7739 g12476 i0 43.3 1.91489361702128 60 34 95.7 0 187 8 13 72 XP_035681117.1 cytochrome P450 7B1-like [Branchiostoma floridae] diamond 360 48.5 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
27241633 27241633 PRJNA721440_S_NODE_6743_length_237_cov_1.835106_g6617_i0 PRJNA721440 6743 237 1.835106 4.34920122 Staurois parvus 386267 Chordata Chordata 53.5 7.58e-7   NR CAI9557087.1 386267 g6617 i0 63.9 0.911392405063291 36 11 43 1 43 144 24 59 CAI9557087.1 unnamed protein product, partial [Staurois parvus] diamond 216 53.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
27283789 27283789 PRJNA721440_S_NODE_7223_length_231_cov_0.857143_g7097_i0 PRJNA721440 7223 231 0.857143 1.98000033 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 52.4 5.82e-6   NR XDB47465.1 9925 g7097 i0 89.3 5.50649350649351 28 3 36.4 0 3 86 159 186 XDB47465.1 hypothetical protein ABFV05_001081 [Capra hircus] diamond 1272 52.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Capra Capra hircus
27442042 27442042 PRJNA721440_S_NODE_13543_length_183_cov_1.604478_g13417_i0 PRJNA721440 13543 183 1.604478 2.93619474 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 97.1 1.85e-24   NR XP_053557215.1 8345 g13417 i0 78.3 3.91803278688525 60 13 98.4 0 2 181 5 64 XP_053557215.1 succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial-like [Bombina bombina] diamond 717 97.8 0.992842535787321 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bombinatoridae Bombina Bombina bombina
28483754 28483754 PRJNA721440_S_NODE_3886_length_293_cov_7.549180_g3760_i0 PRJNA721440 3886 293 7.54918 22.1190974 root 1 Root_unresolved Root_unresolved 117 4.3000000000000004e-30   NR XP_051712873.2 9986 g3760 i0 66.3 41.518771331058 95 28 95.2 2 12 290 111 203 XP_051712873.2 large ribosomal subunit protein eL22 isoform X2 [Oryctolagus cuniculus] diamond 12165 117 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Lagomorpha Leporidae Oryctolagus Oryctolagus cuniculus
29041772 29041772 PRJNA721440_S_NODE_7288_length_230_cov_1.889503_g7162_i0 PRJNA721440 7288 230 1.889503 4.3458569 Arvicanthis niloticus 61156 Chordata Chordata 42.4 0.0431   NR XP_034374341.1 61156 g7162 i0 36.1 0.795652173913043 61 36 75.7 1 229 56 430 490 XP_034374341.1 carcinoembryonic antigen-related cell adhesion molecule 20 [Arvicanthis niloticus] diamond 183 42.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Arvicanthis Arvicanthis niloticus
29136571 29136571 PRJNA721440_S_NODE_20229_length_160_cov_5.765766_g20103_i0 PRJNA721440 20229 160 5.765766 9.2252256 Columba guinea 135627 Chordata Chordata 100 7.539999999999999e-23   NR KAK2511043.1 135627 g20103 i0 72.6 3 62 8 99.4 1 1 159 84 145 KAK2511043.1 Copa [Columba guinea] diamond 480 100 1 Eukaryota Opisthokonta Metazoa Chordata Aves Columbiformes Columbidae Columba Columba guinea
29515001 29515001 PRJNA721440_S_NODE_3770_length_297_cov_2.895161_g3644_i0 PRJNA721440 3770 297 2.895161 8.59862817 Branchiostoma belcheri tsingtauense 155462 Chordata Chordata 77 5.17e-15   NR AAM18076.1 155462 g3644 i0 63.2 0.575757575757576 57 21 57.6 0 296 126 130 186 AAM18076.1 peroxiredoxin V protein [Branchiostoma belcheri tsingtauense] diamond 171 77 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
29525768 29525768 PRJNA721440_S_NODE_17550_length_167_cov_3.635593_g17424_i0 PRJNA721440 17550 167 3.635593 6.07144031 Metazoa 33208 Chordata Chordata 45.4 0.0015   NR XP_051782102.1 27687 g17424 i0 55 3.8622754491018 40 18 71.9 0 35 154 219 258 XP_051782102.1 uncharacterized protein K02A2.6-like [Erpetoichthys calabaricus] diamond 645 45.4 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
29894248 29894248 PRJNA721440_S_NODE_21091_length_156_cov_2.841121_g20965_i0 PRJNA721440 21091 156 2.841121 4.43214876 Amblyraja radiata 386614 Chordata Chordata 71.6 7.19e-13   NR XP_032877958.1 386614 g20965 i0 73.5 4.73076923076923 49 13 94.2 0 5 151 431 479 XP_032877958.1 LOW QUALITY PROTEIN: uncharacterized protein LOC116973759, partial [Amblyraja radiata] diamond 738 71.6 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Rajiformes Rajidae Amblyraja Amblyraja radiata
30273525 30273525 PRJNA721440_S_NODE_11112_length_197_cov_2.783784_g10986_i0 PRJNA721440 11112 197 2.783784 5.48405448 Geotrypetes seraphini 260995 Chordata Chordata 45.8 0.00169   NR XP_033798662.1 260995 g10986 i0 46 3.79187817258883 63 34 95.9 0 6 194 1009 1071 XP_033798662.1 cilia- and flagella-associated protein 43 isoform X1 [Geotrypetes seraphini] diamond 747 45.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Gymnophiona Dermophiidae Geotrypetes Geotrypetes seraphini
30305289 30305289 PRJNA721440_S_NODE_15692_length_173_cov_4.612903_g15566_i0 PRJNA721440 15692 173 4.612903 7.98032219 Styela clava 7725 Chordata Chordata 73.6 3.2e-14   NR XP_039273615.1 7725 g15566 i0 59.6 0.988439306358382 57 23 98.8 0 3 173 80 136 XP_039273615.1 protein CREG1-like [Styela clava] diamond 171 73.6 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
30747224 30747224 PRJNA721440_S_NODE_6814_length_236_cov_2.181818_g6688_i0 PRJNA721440 6814 236 2.181818 5.14909048 Amblyraja radiata 386614 Chordata Chordata 42.4 0.0456   NR XP_032896191.1 386614 g6688 i0 45.8 0.610169491525424 48 25 61 1 233 90 214 260 XP_032896191.1 ribosomal L1 domain-containing protein 1 [Amblyraja radiata] diamond 144 42.4 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Rajiformes Rajidae Amblyraja Amblyraja radiata
31284267 31284267 PRJNA721440_S_NODE_11855_length_192_cov_3.244755_g11729_i0 PRJNA721440 11855 192 3.244755 6.2299296 Erpetoichthys calabaricus 27687 Chordata Chordata 70.5 2.38e-12   NR XP_051791274.1 27687 g11729 i0 73.5 3.828125 49 12 75 1 171 28 156 204 XP_051791274.1 E3 SUMO-protein ligase ZBED1-like [Erpetoichthys calabaricus] diamond 735 70.5 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
31315985 31315985 PRJNA721440_S_NODE_12395_length_189_cov_1.878571_g12269_i0 PRJNA721440 12395 189 1.878571 3.55049919 Phyllostomus discolor 89673 Chordata Chordata 42 0.0337   NR XP_035869557.1 89673 g12269 i0 48.6 0.587301587301587 37 18 58.7 1 152 42 66 101 XP_035869557.1 LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase isozyme L5-like [Phyllostomus discolor] diamond 111 42 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Phyllostomidae Phyllostomus Phyllostomus discolor
31569297 31569297 PRJNA721440_S_NODE_12296_length_189_cov_11.628571_g12170_i0 PRJNA721440 12296 189 11.628571 21.97799919 Phallusia mammillata 59560 Chordata Chordata 77.4 9.15e-15   NR CAB3252815.1 59560 g12170 i0 54.8 2.93650793650794 62 28 98.4 0 188 3 305 366 CAB3252815.1 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial [Phallusia mammillata] diamond 555 77.4 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Ascidiidae Phallusia Phallusia mammillata
31611237 31611237 PRJNA721440_S_NODE_4516_length_277_cov_1.802632_g4390_i0 PRJNA721440 4516 277 1.802632 4.99329064 root 1 Root_unresolved Root_unresolved 43.1 0.0411   NR XP_009857558.1 7719 g4390 i0 33.3 1.84115523465704 84 45 91 2 269 18 203 275 XP_009857558.1 TBC1 domain family member 9 [Ciona intestinalis] diamond 510 43.1 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Cionidae Ciona Ciona intestinalis
31663788 31663788 PRJNA721440_S_NODE_16597_length_170_cov_1.438017_g16471_i0 PRJNA721440 16597 170 1.438017 2.4446289 Ranitomeya imitator 111125 Chordata Chordata 47.4 3.26e-4   NR CAJ0941415.1 111125 g16471 i0 50.9 1.90588235294118 55 27 97.1 0 3 167 614 668 CAJ0941415.1 unnamed protein product [Ranitomeya imitator] diamond 324 47.4 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dendrobatidae Ranitomeya Ranitomeya imitator
31758782 31758782 PRJNA721440_S_NODE_5817_length_250_cov_8.064677_g5691_i0 PRJNA721440 5817 250 8.064677 20.1616925 Gekko japonicus 146911 Chordata Chordata 72 1.99e-12   NR XP_015284848.1 146911 g5691 i0 66 1.212 50 17 60 0 250 101 60 109 XP_015284848.1 PREDICTED: thioredoxin reductase 3 isoform X1 [Gekko japonicus] diamond 303 72 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Gekkonidae Gekko Gekko japonicus
31853615 31853615 PRJNA721440_S_NODE_8037_length_221_cov_30.825581_g7911_i0 PRJNA721440 8037 221 30.825581 68.12453401 Staurois parvus 386267 Chordata Chordata 51.6 1.43e-5   NR CAI9536211.1 386267 g7911 i0 51.8 2.04977375565611 56 20 66.5 3 175 29 170 225 CAI9536211.1 unnamed protein product [Staurois parvus] diamond 453 51.6 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
31885243 31885243 PRJNA721440_S_NODE_10717_length_200_cov_1.331126_g10591_i0 PRJNA721440 10717 200 1.331126 2.662252 Polypterus senegalus 55291 Chordata Chordata 47.4 4.79e-4   NR KAG2466651.1 55291 g10591 i0 61.8 0.51 34 13 51 0 198 97 305 338 KAG2466651.1 TCB1 transposase, partial [Polypterus senegalus] diamond 102 47.4 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
32275703 32275703 PRJNA721440_S_NODE_5838_length_250_cov_2.064677_g5712_i0 PRJNA721440 5838 250 2.064677 5.1616925 Chordata 7711 Chordata Chordata 43.5 0.0185   NR XP_035676453.1 7739 g5712 i0 31.3 2.352 64 40 75.6 2 3 191 181 241 XP_035676453.1 cyclin-Q-like isoform X2 [Branchiostoma floridae] diamond 588 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
32486681 32486681 PRJNA721440_S_NODE_14019_length_181_cov_1.075758_g13893_i0 PRJNA721440 14019 181 1.075758 1.94712198 Athene cunicularia 194338 Chordata Chordata 43.9 0.00661   NR XP_026702274.1 194338 g13893 i0 34.5 1.92265193370166 58 33 87.8 2 1 159 1446 1503 XP_026702274.1 cullin-9 isoform X5 [Athene cunicularia] diamond 348 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Aves Strigiformes Strigidae Athene Athene cunicularia
32780532 32780532 PRJNA721440_S_NODE_7480_length_228_cov_1.351955_g7354_i0 PRJNA721440 7480 228 1.351955 3.0824574 Metazoa 33208 Chordata Chordata 47 9.52e-4   NR XP_069787031.1 1343680 g7354 i0 39.1 4.52631578947368 69 42 90.8 0 212 6 200 268 XP_069787031.1 ribosomal oxygenase 1 isoform X6 [Narcine bancroftii] diamond 1032 47 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Torpediniformes Narcinidae Narcine Narcine bancroftii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;