RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA721440" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA721440 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19837090 19837090 PRJNA721440_S_NODE_19056_length_164_cov_0.904348_g18930_i0 PRJNA721440 19056 164 0.904348 1.48313072 Gregarina niphandrodes 110365 SAR_Eukaryotes SAR_Eukaryotes 74.3 7.69e-14   NR XP_011128544.1 110365 g18930 i0 64.7 1.92073170731707 51 18 93.3 0 11 163 145 195 XP_011128544.1 casein kinase I [Gregarina niphandrodes] diamond 315 74.3 1 Eukaryota Sar   Apicomplexa Conoidasida Eugregarinorida Gregarinidae Gregarina Gregarina niphandrodes
27442040 27442040 PRJNA721440_S_NODE_11783_length_193_cov_1.083333_g11657_i0 PRJNA721440 11783 193 1.083333 2.09083269 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 88.2 1.8e-18   NR XP_019914087.1 208452 g11657 i0 65.1 4.89637305699482 63 22 97.9 0 191 3 458 520 XP_019914087.1 Thioredoxin reductase 2 [Plasmodium coatneyi] diamond 945 88.2 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium coatneyi
30410444 30410444 PRJNA721440_S_NODE_17193_length_168_cov_2.462185_g17067_i0 PRJNA721440 17193 168 2.462185 4.1364708 Eimeriidae 5799 SAR_Eukaryotes SAR_Eukaryotes 56.6 1.77e-7   NR XP_013439913.1 51315 g17067 i0 44 5.35714285714286 50 28 89.3 0 168 19 1177 1226 XP_013439913.1 hypothetical protein, conserved [Eimeria necatrix] diamond 900 57 0.992982456140351 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria necatrix
30936878 30936878 PRJNA721440_S_NODE_20734_length_158_cov_2.165138_g20608_i0 PRJNA721440 20734 158 2.165138 3.42091804 Theileria equi strain WA 1537102 SAR_Eukaryotes SAR_Eukaryotes 44.7 0.00245   NR XP_004828842.1 1537102 g20608 i0 46 0.949367088607595 50 27 94.9 0 3 152 136 185 XP_004828842.1 nucleotidyltransferase domain containing protein [Theileria equi strain WA] diamond 150 44.7 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Theileriidae Theileria Theileria equi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;