contig_metadata
6 rows where analysis = "diamond", bioproject = "PRJNA720429" and tax_phylum = "Bacillota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 5813587 | 5813587 | PRJNA720429_P_NODE_4985_length_241_cov_1.684524_g4928_i0 | PRJNA720429 | 4985 | 241 | 1.684524 | 4.05970284 | Gemelliphila asaccharolytica | 502393 | Bacteria | Bacteria | 155 | 1.86e-43 | NR | WP_066129019.1 | 502393 | g4928 | i0 | 87.3 | 21.6224066390042 | 79 | 10 | 98.3 | 0 | 239 | 3 | 174 | 252 | WP_066129019.1 glycine--tRNA ligase [Gemelliphila asaccharolytica] | diamond | 5211 | 155 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Gemellaceae | Gemelliphila | Gemelliphila asaccharolytica | ||
| 27778772 | 27778772 | PRJNA720429_P_NODE_4544_length_244_cov_0.900585_g4487_i0 | PRJNA720429 | 4544 | 244 | 0.900585 | 2.1974274 | Peptoniphilus lacydonensis | 1673725 | Bacteria | Bacteria | 157 | 2.38e-46 | NR | WP_288151060.1 | 1673725 | g4487 | i0 | 100 | 0.983606557377049 | 80 | 0 | 98.4 | 0 | 242 | 3 | 111 | 190 | WP_288151060.1 methionine ABC transporter permease [Peptoniphilus lacydonensis] | diamond | 240 | 157 | 1 | Bacteria | Bacillati | Bacillota | Tissierellia | Tissierellales | Peptoniphilaceae | Peptoniphilus | Peptoniphilus lacydonensis | ||
| 29873025 | 29873025 | PRJNA720429_P_NODE_4631_length_243_cov_1.800000_g4574_i0 | PRJNA720429 | 4631 | 243 | 1.8 | 4.374 | Pseudalkalibacillus | 2893058 | Bacteria | Bacteria | 74.3 | 5.55e-14 | NR | WP_257350261.1 | 163879 | g4574 | i0 | 53.3 | 2.74074074074074 | 75 | 34 | 92.6 | 1 | 243 | 19 | 107 | 180 | WP_257350261.1 ComF family protein [Pseudalkalibacillus decolorationis] | diamond | 666 | 74.3 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Fictibacillaceae | Pseudalkalibacillus | Pseudalkalibacillus decolorationis | ||
| 30252288 | 30252288 | PRJNA720429_P_NODE_4552_length_244_cov_0.900585_g4495_i0 | PRJNA720429 | 4552 | 244 | 0.900585 | 2.1974274 | Effusibacillus | 1502725 | Bacteria | Bacteria | 72.4 | 8.51e-14 | NR | WP_096182519.1 | 1348429 | g4495 | i0 | 64 | 1.20491803278689 | 50 | 18 | 61.5 | 0 | 9 | 158 | 103 | 152 | WP_096182519.1 8-oxo-dGTP diphosphatase [Effusibacillus lacus] | diamond | 294 | 72.4 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Alicyclobacillaceae | Effusibacillus | Effusibacillus lacus | ||
| 30936866 | 30936866 | PRJNA720429_P_NODE_4734_length_243_cov_0.905882_g4677_i0 | PRJNA720429 | 4734 | 243 | 0.905882 | 2.20129326 | Scopulibacillus darangshiensis | 442528 | Bacteria | Bacteria | 72.4 | 1.31e-12 | NR | WP_132746929.1 | 442528 | g4677 | i0 | 63.6 | 0.679012345679012 | 55 | 20 | 67.9 | 0 | 3 | 167 | 670 | 724 | WP_132746929.1 ribonuclease R [Scopulibacillus darangshiensis] | diamond | 165 | 72.4 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Sporolactobacillaceae | Scopulibacillus | Scopulibacillus darangshiensis | ||
| 31315981 | 31315981 | PRJNA720429_P_NODE_3815_length_248_cov_0.880000_g3758_i0 | PRJNA720429 | 3815 | 248 | 0.88 | 2.1824 | Granulicatella elegans | 137732 | Bacteria | Bacteria | 147 | 3.42e-41 | NR | WP_006702678.1 | 137732 | g3758 | i0 | 96.4 | 1.00403225806452 | 83 | 2 | 99.2 | 1 | 247 | 2 | 126 | 208 | WP_006702678.1 ADP-ribosylglycohydrolase family protein [Granulicatella elegans] | diamond | 249 | 147 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Carnobacteriaceae | Granulicatella | Granulicatella elegans |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;