RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA720429" and tax_kingdom = "Metazoa"

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tax_phylum 5

tax_superkingdom 1

tax_kingdom 1

  • Metazoa · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA720429 · 5 ✖

analysis 1

  • diamond · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2468904 2468904 PRJNA720429_P_NODE_402_length_635_cov_2.389680_g348_i0 PRJNA720429 402 635 2.38968 15.174468 Sus scrofa 9823 Chordata Chordata 377 8.42e-127   NR XP_020938199.1 9823 g348 i0 100 1.75748031496063 186 0 87.9 0 76 633 65 250 XP_020938199.1 ribonuclease inhibitor isoform X2 [Sus scrofa] diamond 1116 377 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
3261295 3261295 PRJNA720429_P_NODE_4083_length_247_cov_0.885057_g4026_i0 PRJNA720429 4083 247 0.885057 2.18609079 Brachionus calyciflorus 104777 Rotifera other_Eukaryota 110 2.07e-27   NR CAF0892122.1 104777 g4026 i0 71.6 3.93522267206478 81 23 98.4 0 3 245 3 83 CAF0892122.1 unnamed protein product [Brachionus calyciflorus] diamond 972 110 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus calyciflorus
28851925 28851925 PRJNA720429_P_NODE_2408_length_280_cov_1.487923_g2351_i0 PRJNA720429 2408 280 1.487923 4.1661844 Medioppia subpectinata 1979941 Arthropoda Arthropoda 131 4.34e-36   NR CAD7627118.1 1979941 g2351 i0 75.6 11.3464285714286 86 21 92.1 0 278 21 24 109 CAD7627118.1 unnamed protein product [Medioppia subpectinata] diamond 3177 131 1 Eukaryota Opisthokonta Metazoa Arthropoda Arachnida Sarcoptiformes Oppiidae Medioppia Medioppia subpectinata
29357361 29357361 PRJNA720429_P_NODE_4349_length_245_cov_0.895349_g4292_i0 PRJNA720429 4349 245 0.895349 2.19360505 Steinernema hermaphroditum 289476 Nematoda Nematoda 73.2 7.23e-13   NR KAK0424339.1 289476 g4292 i0 64.7 3.24489795918367 51 18 62.4 0 154 2 276 326 KAK0424339.1 hypothetical protein QR680_008618 [Steinernema hermaphroditum] diamond 795 73.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Steinernematidae Steinernema Steinernema hermaphroditum
30999997 30999997 PRJNA720429_P_NODE_4014_length_247_cov_0.885057_g3957_i0 PRJNA720429 4014 247 0.885057 2.18609079 Mya arenaria 6604 Mollusca Mollusca 52.8 6.86e-6   NR XP_052770210.1 6604 g3957 i0 40 1.55465587044534 65 39 78.9 0 21 215 138 202 XP_052770210.1 vesicle transport through interaction with t-SNAREs homolog 1B-like [Mya arenaria] diamond 384 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Myida Myidae Mya Mya arenaria

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;