RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA720429" and tax_clade = "PVC group"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA720429 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28410154 28410154 PRJNA720429_P_NODE_3166_length_251_cov_2.595506_g3109_i0 PRJNA720429 3166 251 2.595506 6.51472006 Chlamydiota bacterium 2081524 Bacteria Bacteria 56.6 3.32e-7   NR MCX6986839.1 2081524 g3109 i0 32.1 1.00398406374502 84 56 99.2 1 249 1 126 209 MCX6986839.1 DUF4116 domain-containing protein [Chlamydiota bacterium] diamond 252 56.6 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
28631326 28631326 PRJNA720429_P_NODE_4887_length_242_cov_0.911243_g4830_i0 PRJNA720429 4887 242 0.911243 2.20520806 Prosthecobacter sp. 1965333 Bacteria Bacteria 158 5.56e-47   NR MDB6005343.1 1965333 g4830 i0 90 0.991735537190083 80 8 99.2 0 240 1 75 154 MDB6005343.1 hypothetical protein [Prosthecobacter sp.] diamond 240 158 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;