RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA720429" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA720429 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27904650 27904650 PRJNA720429_P_NODE_2285_length_285_cov_1.353774_g2228_i0 PRJNA720429 2285 285 1.353774 3.8582559 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 78.6 1.23e-15   NR PRP77835.1 1890364 g2228 i0 45.7 0.989473684210526 94 41 97.9 4 5 283 59 143 PRP77835.1 hypothetical protein PROFUN_14154 [Planoprotostelium fungivorum] diamond 282 78.6 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
28631323 28631323 PRJNA720429_P_NODE_3227_length_251_cov_0.865169_g3170_i0 PRJNA720429 3227 251 0.865169 2.17157419 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 131 2.67e-33   NR PRP85761.1 1890364 g3170 i0 70 0.956175298804781 80 24 95.6 0 243 4 24 103 PRP85761.1 C2 domain-containing protein [Planoprotostelium fungivorum] diamond 240 131 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
32433929 32433929 PRJNA720429_P_NODE_4279_length_246_cov_0.861272_g4222_i0 PRJNA720429 4279 246 0.861272 2.11872912 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 59.7 4.08e-8   NR XP_004338190.1 1257118 g4222 i0 44.4 1.95121951219512 81 37 98.8 2 246 4 83 155 XP_004338190.1 cytochrome P450, putative [Acanthamoeba castellanii str. Neff] diamond 480 60.1 0.993344425956739 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;