RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA719595" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA719595 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10913457 10913457 PRJNA719595_P_NODE_6409_length_253_cov_0.866667_g6374_i0 PRJNA719595 6409 253 0.866667 2.19266751 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 143 2.1399999999999996e-37   NR DBA03560.1 4803 g6374 i0 84.5 36.8656126482213 84 13 99.6 0 2 253 512 595 DBA03560.1 TPA: hypothetical protein N0F65_011461 [Lagenidium giganteum] diamond 9327 143 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
29672704 29672704 PRJNA719595_P_NODE_7850_length_248_cov_0.891429_g7815_i0 PRJNA719595 7850 248 0.891429 2.21074392 Pythium insidiosum 114742 SAR_Eukaryotes SAR_Eukaryotes 113 2.69e-28   NR KAJ0398756.1 114742 g7815 i0 69.5 2.9758064516129 82 25 99.2 0 247 2 104 185 KAJ0398756.1 hypothetical protein P43SY_009824 [Pythium insidiosum] diamond 738 113 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum
32612823 32612823 PRJNA719595_P_NODE_9120_length_243_cov_0.917647_g9085_i0 PRJNA719595 9120 243 0.917647 2.22988221 Pythium insidiosum 114742 SAR_Eukaryotes SAR_Eukaryotes 45.4 0.00443   NR GLD91835.1 114742 g9085 i0 37.3 1.45679012345679 59 37 72.8 0 34 210 1143 1201 GLD91835.1 hypothetical protein PINS_up000368 [Pythium insidiosum] diamond 354 45.4 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;