RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA719595" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA719595 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27747239 27747239 PRJNA719595_P_NODE_8904_length_244_cov_0.912281_g8869_i0 PRJNA719595 8904 244 0.912281 2.22596564 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 129 1.3e-36   NR XP_004339447.1 1257118 g8869 i0 78.2 16.5491803278689 78 17 95.9 0 9 242 4 81 XP_004339447.1 ribosomal protein S26e, putative [Acanthamoeba castellanii str. Neff] diamond 4038 129 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32770136 32770136 PRJNA719595_P_NODE_8120_length_247_cov_0.896552_g8085_i0 PRJNA719595 8120 247 0.896552 2.21448344 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 51.2 4.12e-5   NR PRP77191.1 1890364 g8085 i0 32.9 0.995951417004049 82 55 99.6 0 246 1 333 414 PRP77191.1 hypothetical protein PROFUN_13377 [Planoprotostelium fungivorum] diamond 246 51.2 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;