RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA716463" and tax_phylum = "Synergistota"

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tax_superkingdom 1

tax_phylum 1

  • Synergistota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA716463 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28283489 28283489 PRJNA716463_P_NODE_18846_length_310_cov_4.063291_g18429_i0 PRJNA716463 18846 310 4.063291 12.5962021 uncultured Fretibacterium sp. 1678694 Bacteria Bacteria 96.3 6.53e-21   NR WP_347712494.1 1678694 g18429 i0 92 0.483870967741935 50 4 48.4 0 2 151 343 392 WP_347712494.1 murein hydrolase activator EnvC family protein [uncultured Fretibacterium sp.] diamond 150 96.3 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium uncultured Fretibacterium sp.
31579646 31579646 PRJNA716463_P_NODE_61656_length_282_cov_3.196172_g61239_i0 PRJNA716463 61656 282 3.196172 9.01320504 Bacteria 2 Bacteria Bacteria 176 5.92e-52   NR WP_279009009.1 2754 g61239 i0 95.7 3 94 4 100 0 1 282 138 231 WP_279009009.1 PDDEXK nuclease domain-containing protein [Synergistes jonesii] diamond 846 177 0.994350282485876 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae Synergistes Synergistes jonesii
32201748 32201748 PRJNA716463_P_NODE_50518_length_290_cov_2.023041_g50101_i0 PRJNA716463 50518 290 2.023041 5.8668189 uncultured Fretibacterium sp. 1678694 Bacteria Bacteria 160 2.9299999999999997e-45   NR WP_299299363.1 1678694 g50101 i0 84 0.972413793103448 94 15 97.2 0 287 6 40 133 WP_299299363.1 hypothetical protein [uncultured Fretibacterium sp.] diamond 282 160 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium uncultured Fretibacterium sp.
32518384 32518384 PRJNA716463_P_NODE_56359_length_286_cov_2.281690_g55942_i0 PRJNA716463 56359 286 2.28169 6.5256334 uncultured Fretibacterium sp. 1678694 Bacteria Bacteria 131 1.6299999999999998e-35   NR WP_299080401.1 1678694 g55942 i0 100 0.587412587412587 56 0 58.7 0 4 171 213 268 WP_299080401.1 C69 family dipeptidase, partial [uncultured Fretibacterium sp.] diamond 168 131 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium uncultured Fretibacterium sp.
32550014 32550014 PRJNA716463_P_NODE_5179_length_463_cov_4.079487_g4772_i0 PRJNA716463 5179 463 4.079487 18.88802481 Synergistales bacterium 2268201 Bacteria Bacteria 51.6 2.82e-4   NR GHV34464.1 2268201 g4772 i0 80 0.414686825053996 30 6 19.4 0 251 162 4 33 GHV34464.1 hypothetical protein FACS1894187_05060 [Synergistales bacterium] diamond 192 51.6 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales     Synergistales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;