RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA716463" and tax_phylum = "Methanobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA716463 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27715821 27715821 PRJNA716463_P_NODE_75004_length_272_cov_3.231156_g74587_i0 PRJNA716463 75004 272 3.231156 8.78874432 Methanothrix sp. 90426 Archaea Archaea 55.5 1.73e-6   NR TFH48370.1 90426 g74587 i0 43.1 0.716911764705882 65 35 71.7 1 260 66 88 150 TFH48370.1 MAG: hypothetical protein E4G89_06400 [Methanothrix sp.] diamond 195 55.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix sp.
29778118 29778118 PRJNA716463_P_NODE_42091_length_297_cov_3.191964_g41674_i0 PRJNA716463 42091 297 3.191964 9.48013308 root 1 Root_unresolved Root_unresolved 59.3 9.35e-8   NR WP_303346976.1 66852 g41674 i0 67.5 2.19191919191919 40 13 40.4 0 145 26 2 41 WP_303346976.1 DNA cytosine methyltransferase [Methanobrevibacter sp.] diamond 651 59.7 0.993299832495812 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;