RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA715462" and tax_phylum = "Candidatus Peregrinibacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Peregrinibacteriota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA715462 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29073227 29073227 PRJNA715462_P_NODE_52828_length_250_cov_0.870056_g52032_i0 PRJNA715462 52828 250 0.870056 2.17514 Candidatus Peribacteraceae bacterium 2735830 Bacteria Bacteria 48.1 4.51e-4   NR MDD5025828.1 2735830 g52032 i0 42.1 0.96 38 22 45.6 0 134 21 55 92 MDD5025828.1 hypothetical protein [Candidatus Peribacteraceae bacterium] diamond 240 48.1 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota Candidatus Peribacteria Candidatus Peribacterales     Candidatus Peribacteraceae bacterium
30125465 30125465 PRJNA715462_P_NODE_15952_length_482_cov_3.029340_g15156_i0 PRJNA715462 15952 482 3.02934 14.6014188 Bacteria 2 Bacteria Bacteria 45.8 0.031   NR QQR83436.1 2030811 g15156 i0 35.3 1.05809128630705 85 53 52.3 2 322 71 441 524 QQR83436.1 MAG: hypothetical protein IPJ72_06645 [Candidatus Peregrinibacteria bacterium] diamond 510 45.8 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota         Candidatus Peregrinibacteria bacterium
31663661 31663661 PRJNA715462_P_NODE_53797_length_249_cov_1.454545_g53001_i0 PRJNA715462 53797 249 1.454545 3.62181705 Candidatus Peregrinibacteria bacterium 2030811 Bacteria Bacteria 99.8 4.4e-23   NR MCA9374224.1 2030811 g53001 i0 62.2 1.98795180722892 82 30 97.6 1 248 6 199 280 MCA9374224.1 uridine phosphorylase [Candidatus Peregrinibacteria bacterium] diamond 495 99.8 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota         Candidatus Peregrinibacteria bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;