RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

19 rows where analysis = "diamond", bioproject = "PRJNA713989" and tax_phylum = "Pseudomonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Pseudomonadota · 19 ✖

tax_kingdom 1

bioproject 1

  • PRJNA713989 · 19 ✖

analysis 1

  • diamond · 19 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3254749 3254749 PRJNA713989_S_NODE_13683_length_162_cov_0.902655_g13623_i0 PRJNA713989 13683 162 0.902655 1.4623011 Acidovorax sp. 1872122 Bacteria Bacteria 97.4 4.1800000000000003e-22   NR WP_291468816.1 1872122 g13623 i0 94.2 0.962962962962963 52 3 96.3 0 2 157 192 243 WP_291468816.1 diguanylate cyclase domain-containing protein [Acidovorax sp.] diamond 156 97.4 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax sp.
12670811 12670811 PRJNA713989_S_NODE_14050_length_161_cov_0.910714_g13990_i0 PRJNA713989 14050 161 0.910714 1.46624954 Hyphomicrobiales bacterium 1909294 Bacteria Bacteria 89 2.05e-19   NR MBN8944897.1 1909294 g13990 i0 86.5 0.968944099378882 52 7 96.9 0 159 4 137 188 MBN8944897.1 alpha/beta hydrolase [Hyphomicrobiales bacterium] diamond 156 89 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales     Hyphomicrobiales bacterium
26650721 26650721 PRJNA713989_S_NODE_2281_length_328_cov_1.279570_g2221_i0 PRJNA713989 2281 328 1.27957 4.1969896 Sphingopyxis 165697 Bacteria Bacteria 45.8 0.00668   NR WP_145923715.1 33050 g2221 i0 46.6 1.0609756097561 58 26 49.4 2 303 142 192 248 WP_145923715.1 hypothetical protein [Sphingopyxis macrogoltabida] diamond 348 45.8 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingopyxis Sphingopyxis macrogoltabida
26703470 26703470 PRJNA713989_S_NODE_5981_length_219_cov_0.847059_g5921_i0 PRJNA713989 5981 219 0.847059 1.85505921 Rhodoligotrophos appendicifer 987056 Bacteria Bacteria 42.7 0.0272   NR WP_144293512.1 987056 g5921 i0 44.4 0.73972602739726 54 26 74 1 56 217 55 104 WP_144293512.1 acetate--CoA ligase family protein [Rhodoligotrophos appendicifer] diamond 162 42.7 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Rhodoligotrophaceae Rhodoligotrophos Rhodoligotrophos appendicifer
26734931 26734931 PRJNA713989_S_NODE_13801_length_162_cov_0.902655_g13741_i0 PRJNA713989 13801 162 0.902655 1.4623011 Cupriavidus sp. D384 1538095 Bacteria Bacteria 111 3.6e-27   NR WP_066739178.1 1538095 g13741 i0 100 0.981481481481482 53 0 98.1 0 161 3 38 90 WP_066739178.1 acyclic terpene utilization AtuA family protein [Cupriavidus sp. D384] diamond 159 111 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Burkholderiaceae Cupriavidus Cupriavidus sp. D384
26862376 26862376 PRJNA713989_S_NODE_10081_length_179_cov_1.169231_g10021_i0 PRJNA713989 10081 179 1.169231 2.09292349 Escherichia coli 562 Bacteria Bacteria 56.6 6.75e-9   NR WP_337443549.1 562 g10021 i0 75 0.536312849162011 32 8 53.6 0 84 179 34 65 WP_337443549.1 hypothetical protein, partial [Escherichia coli] diamond 96 56.6 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli
27114903 27114903 PRJNA713989_S_NODE_14542_length_155_cov_2.349057_g14482_i0 PRJNA713989 14542 155 2.349057 3.64103835 Escherichia coli 562 Bacteria Bacteria 59.3 6.15e-10   NR EAA1191103.1 562 g14482 i0 58.5 2.34193548387097 41 17 79.4 0 131 9 1 41 EAA1191103.1 hypothetical protein [Escherichia coli] diamond 363 59.3 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli
27178119 27178119 PRJNA713989_S_NODE_12722_length_165_cov_0.879310_g12662_i0 PRJNA713989 12722 165 0.87931 1.4508615 Francisella sp. 2047875 Bacteria Bacteria 110 4.33e-29   NR PZU05080.1 2047875 g12662 i0 100 0.927272727272727 51 0 92.7 0 164 12 130 180 PZU05080.1 MAG: oligoribonuclease [Francisella sp.] diamond 153 110 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Thiotrichales Francisellaceae Francisella Francisella sp.
27252067 27252067 PRJNA713989_S_NODE_13123_length_164_cov_0.886957_g13063_i0 PRJNA713989 13123 164 0.886957 1.45460948 Acinetobacter 469 Bacteria Bacteria 102 1.66e-23   NR MEF9957774.1 472 g13063 i0 98.1 4.9390243902439 54 1 98.8 0 2 163 500 553 MEF9957774.1 phage tail tape measure protein [Acinetobacter sp.] diamond 810 103 0.990291262135922 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter sp.
27599788 27599788 PRJNA713989_S_NODE_6684_length_210_cov_0.689441_g6624_i0 PRJNA713989 6684 210 0.689441 1.4478261 root 1 Root_unresolved Root_unresolved 126 8.95e-34   NR WP_270022569.1 287 g6624 i0 85.7 384 70 10 100 0 1 210 103 172 WP_270022569.1 hypothetical protein [Pseudomonas aeruginosa] diamond 80640 126 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa
27841446 27841446 PRJNA713989_S_NODE_11924_length_167_cov_0.864407_g11864_i0 PRJNA713989 11924 167 0.864407 1.44355969 Accumulibacter sp. 2053492 Bacteria Bacteria 114 1.32e-30   NR HNL14809.1 2053492 g11864 i0 98.2 0.988023952095808 55 1 98.8 0 1 165 46 100 HNL14809.1 hypothetical protein [Accumulibacter sp.] diamond 165 114 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria     Candidatus Accumulibacter Accumulibacter sp.
28188658 28188658 PRJNA713989_S_NODE_12606_length_165_cov_0.879310_g12546_i0 PRJNA713989 12606 165 0.87931 1.4508615 Glacieibacterium frigidum 2593303 Bacteria Bacteria 41.2 0.0454   NR WP_185965114.1 2593303 g12546 i0 39.1 0.836363636363636 46 23 83.6 1 163 26 534 574 WP_185965114.1 YbhB/YbcL family Raf kinase inhibitor-like protein [Glacieibacterium frigidum] diamond 138 41.2 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingosinicellaceae Glacieibacterium Glacieibacterium frigidum
28536446 28536446 PRJNA713989_S_NODE_13447_length_163_cov_0.894737_g13387_i0 PRJNA713989 13447 163 0.894737 1.45842131 Methylobacterium 407 Bacteria Bacteria 80.5 5.77e-16   NR WP_238274985.1 407 g13387 i0 100 0.975460122699387 53 0 97.5 0 3 161 187 239 WP_238274985.1 MULTISPECIES: MATE family efflux transporter [Methylobacterium] diamond 159 80.5 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Methylobacteriaceae Methylobacterium  
29399263 29399263 PRJNA713989_S_NODE_10629_length_175_cov_0.825397_g10569_i0 PRJNA713989 10629 175 0.825397 1.44444475 root 1 Root_unresolved Root_unresolved 84.3 9.37e-18   NR WP_270022569.1 287 g10569 i0 67.2 361.422857142857 58 19 99.4 0 174 1 149 206 WP_270022569.1 hypothetical protein [Pseudomonas aeruginosa] diamond 63249 84.3 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas aeruginosa
30051757 30051757 PRJNA713989_S_NODE_12351_length_166_cov_0.871795_g12291_i0 PRJNA713989 12351 166 0.871795 1.4471797 Paracoccus aurantius 3073814 Bacteria Bacteria 52 5.96e-6   NR WP_311162096.1 3073814 g12291 i0 92 1.8433734939759 25 2 45.2 0 76 2 3 27 WP_311162096.1 SDR family NAD(P)-dependent oxidoreductase [Paracoccus aurantius] diamond 306 52 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Rhodobacterales Paracoccaceae Paracoccus Paracoccus aurantius
30494320 30494320 PRJNA713989_S_NODE_11753_length_167_cov_1.542373_g11693_i0 PRJNA713989 11753 167 1.542373 2.57576291 Rubritepida sp. 2497596 Bacteria Bacteria 40 0.0294   NR MBC7431616.1 2497596 g11693 i0 50 0.467065868263473 26 13 46.7 0 58 135 43 68 MBC7431616.1 DUF1467 family protein [Rubritepida sp.] diamond 78 40 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Acetobacterales Roseomonadaceae Rubritepida Rubritepida sp.
30936696 30936696 PRJNA713989_S_NODE_14554_length_154_cov_29.714286_g14494_i0 PRJNA713989 14554 154 29.714286 45.76000044 Klebsiella pneumoniae 573 Bacteria Bacteria 110 2.19e-29   NR WP_416532323.1 573 g14494 i0 100 0.993506493506494 51 0 99.4 0 153 1 95 145 WP_416532323.1 hypothetical protein, partial [Klebsiella pneumoniae] diamond 153 110 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae
32391453 32391453 PRJNA713989_S_NODE_6759_length_209_cov_0.975000_g6699_i0 PRJNA713989 6759 209 0.975 2.03775 Escherichia 561 Bacteria Bacteria 40.8 0.0258   NR WP_404855453.1 561 g6699 i0 40 0.789473684210526 55 31 78.9 1 25 189 32 84 WP_404855453.1 MULTISPECIES: IS66 family transposase [Escherichia] diamond 165 40.8 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia  
32518263 32518263 PRJNA713989_S_NODE_12219_length_166_cov_0.871795_g12159_i0 PRJNA713989 12219 166 0.871795 1.4471797 Acidovorax sp. 1872122 Bacteria Bacteria 109 3.44e-26   NR WP_291439237.1 1872122 g12159 i0 94.5 1.96987951807229 55 3 99.4 0 1 165 692 746 WP_291439237.1 hypothetical protein [Acidovorax sp.] diamond 327 109 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales Comamonadaceae Acidovorax Acidovorax sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;