RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA713989" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA713989 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29988748 29988748 PRJNA713989_S_NODE_9651_length_182_cov_1.488722_g9591_i0 PRJNA713989 9651 182 1.488722 2.70947404 Chthoniobacterales bacterium 2201154 Bacteria Bacteria 41.6 0.0423   NR MFL6529243.1 2201154 g9591 i0 40 0.659340659340659 40 24 65.9 0 128 9 196 235 MFL6529243.1 chromate efflux transporter [Chthoniobacterales bacterium] diamond 120 41.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales     Chthoniobacterales bacterium
30810186 30810186 PRJNA713989_S_NODE_13894_length_161_cov_2.830357_g13834_i0 PRJNA713989 13894 161 2.830357 4.55687477 uncultured Akkermansia sp. 512294 Bacteria Bacteria 41.6 0.0319   NR WP_295928094.1 512294 g13834 i0 36.4 0.819875776397516 44 28 82 0 147 16 10 53 WP_295928094.1 FtsK/SpoIIIE family DNA translocase [uncultured Akkermansia sp.] diamond 132 41.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia uncultured Akkermansia sp.
32612688 32612688 PRJNA713989_S_NODE_14680_length_152_cov_3.786408_g14620_i0 PRJNA713989 14680 152 3.786408 5.75534016 Planctomycetota bacterium 2026780 Bacteria Bacteria 41.6 0.0277   NR MBN8643811.1 2026780 g14620 i0 40 0.888157894736842 45 25 88.8 1 10 144 283 325 MBN8643811.1 radical SAM family heme chaperone HemW [Planctomycetota bacterium] diamond 135 41.6 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;