RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA706190" and tax_clade = "core chlorophytes"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 3 ✖

bioproject 1

  • PRJNA706190 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29483196 29483196 PRJNA706190_P_NODE_8990_length_242_cov_1.300518_g8854_i0 PRJNA706190 8990 242 1.300518 3.14725356 Tetradesmus obliquus 3088 Plants Plants 124 5.38e-31   NR WIA41017.1 3088 g8854 i0 72.4 1.88429752066116 76 21 94.2 0 1 228 654 729 WIA41017.1 hypothetical protein OEZ86_004655 [Tetradesmus obliquus] diamond 456 124 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Tetradesmus Tetradesmus obliquus
30431442 30431442 PRJNA706190_P_NODE_33793_length_185_cov_1.433824_g33657_i0 PRJNA706190 33793 185 1.433824 2.6525744 Tetradesmus obliquus 3088 Plants Plants 56.6 8.93e-8   NR WIA37704.1 3088 g33657 i0 62.2 0.72972972972973 45 17 73 0 182 48 60 104 WIA37704.1 hypothetical protein OEZ86_014589 [Tetradesmus obliquus] diamond 135 56.6 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Tetradesmus Tetradesmus obliquus
30999827 30999827 PRJNA706190_P_NODE_32174_length_187_cov_1.507246_g32038_i0 PRJNA706190 32174 187 1.507246 2.81855002 Tetradesmus obliquus 3088 Plants Plants 75.5 3.77e-14   NR WIA42274.1 3088 g32038 i0 74 0.802139037433155 50 13 80.2 0 160 11 124 173 WIA42274.1 hypothetical protein OEZ86_008290 [Tetradesmus obliquus] diamond 150 75.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Tetradesmus Tetradesmus obliquus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;