RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA706190" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA706190 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29957039 29957039 PRJNA706190_P_NODE_53811_length_168_cov_0.873950_g53675_i0 PRJNA706190 53811 168 0.87395 1.468236 Patescibacteria group bacterium 2052139 Bacteria Bacteria 70.9 5.04e-13   NR MBU0766728.1 2052139 g53675 i0 64.4 0.803571428571429 45 16 80.4 0 167 33 129 173 MBU0766728.1 class I SAM-dependent methyltransferase [Patescibacteria group bacterium] diamond 135 70.9 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium
30841859 30841859 PRJNA706190_P_NODE_24034_length_199_cov_3.226667_g23898_i0 PRJNA706190 24034 199 3.226667 6.42106733 candidate division SR1 bacterium Aalborg_AAW-1 1643353 Bacteria Bacteria 47 5.64e-4   NR AKH33158.1 1643353 g23898 i0 39.3 0.919597989949749 61 37 92 0 188 6 9 69 AKH33158.1 hypothetical protein XF24_00835 [candidate division SR1 bacterium Aalborg_AAW-1] diamond 183 47 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota         candidate division SR1 bacterium Aalborg_AAW-1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;