RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA704949" and tax_phylum = "Candidatus Yanofskyibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Yanofskyibacteriota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA704949 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27094035 27094035 PRJNA704949_P_NODE_864562_length_284_cov_2.434043_g849228_i0 PRJNA704949 864562 284 2.434043 6.91268212 Bacteria 2 Bacteria Bacteria 83.6 8.72e-17   NR OGM95834.1 1802658 g849228 i0 46.6 4.51056338028169 88 47 93 0 280 17 128 215 OGM95834.1 MAG: hypothetical protein A2816_00200 [Candidatus Yanofskybacteria bacterium RIFCSPHIGHO2_01_FULL_39_44] diamond 1281 84 0.995238095238095 Bacteria Bacteria candidate phyla   Candidatus Yanofskyibacteriota         Candidatus Yanofskybacteria bacterium RIFCSPHIGHO2_01_FULL_39_44
32201630 32201630 PRJNA704949_P_NODE_9658_length_3567_cov_8.173394_g4567_i0 PRJNA704949 9658 3567 8.173394 291.54496398 Candidatus Yanofskybacteria bacterium RIFCSPHIGHO2_ 2052154 Bacteria Bacteria 256 2.58e-72   NR OGN01129.1 1802663 g4567 i0 39 0.310344827586207 369 189 30.6 6 1684 2775 3 340 OGN01129.1 MAG: hypothetical protein A2650_00515 [Candidatus Yanofskybacteria bacterium RIFCSPHIGHO2_01_FULL_41_53] diamond 1107 256 1 Bacteria Bacteria candidate phyla   Candidatus Yanofskyibacteriota         Candidatus Yanofskybacteria bacterium RIFCSPHIGHO2_01_FULL_41_53
32623147 32623147 PRJNA704949_P_NODE_870140_length_283_cov_2.149573_g854806_i0 PRJNA704949 870140 283 2.149573 6.08329159 Pseudomonadati 3379134 Bacteria Bacteria 75.9 8.21e-14   NR OGM98173.1 1802660 g854806 i0 42.5 6.39222614840989 87 49 91.2 1 18 275 230 316 OGM98173.1 MAG: hypothetical protein A2735_00495 [Candidatus Yanofskybacteria bacterium RIFCSPHIGHO2_01_FULL_41_21] diamond 1809 75.9 1 Bacteria Bacteria candidate phyla   Candidatus Yanofskyibacteriota         Candidatus Yanofskybacteria bacterium RIFCSPHIGHO2_01_FULL_41_21

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;