RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA704949" and tax_phylum = "Candidatus Lindowiibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Lindowiibacteriota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA704949 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16492074 16492074 PRJNA704949_P_NODE_3793_length_8749_cov_5.205402_g957_i0 PRJNA704949 3793 8749 5.205402 455.42062098 Bacteria 2 Bacteria Bacteria 440 9.84e-136   NR OGH58318.1 1817869 g957 i0 63.2 0.230426334438221 337 123 11.5 1 6484 7491 3 339 OGH58318.1 MAG: epimerase [Candidatus Lindowbacteria bacterium RIFCSPLOWO2_02_FULL_62_12] diamond 2016 442 0.995475113122172 Bacteria Bacteria candidate phyla   Candidatus Lindowiibacteriota         Candidatus Lindowbacteria bacterium RIFCSPLOWO2_02_FULL_62_12
31473742 31473742 PRJNA704949_P_NODE_1800296_length_177_cov_2.390625_g1784957_i0 PRJNA704949 1800296 177 2.390625 4.23140625 Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27 1817870 Bacteria Bacteria 69.3 3.37e-13   NR OGH61645.1 1817870 g1784957 i0 67.4 0.779661016949153 46 15 78 0 27 164 6 51 OGH61645.1 MAG: transcriptional regulator [Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27] diamond 138 69.3 1 Bacteria Bacteria candidate phyla   Candidatus Lindowiibacteriota         Candidatus Lindowbacteria bacterium RIFCSPLOWO2_12_FULL_62_27

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;